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Gencovery launches Fair Open Access to Constellab
Fair Open Access embodies transparency, inclusivity, and collaboration. It ensures that data science resources are accessible to all, fostering innovation and progress in research. By promoting up-to-...
Analyse your data with interactive dashboards using Streamlit!
Streamlit is a widely-used Python package that enables rapid development of data applications. It is renowned for its simplicity and efficiency, making it an ideal tool for creating interactive dashbo...
Constellab Contest Guidelines
The Constellab Contest isn't just a competition; it's a movement towards open source innovation and collective knowledge in the life sciences. Are you passionate about pushing the boundaries of knowle...
Single-cell RNA-Seq Analysis Pipeline
In 2023, Batignes et al. published an article intitled "Enhanced Inflammatory Signaling Driven by Metabolic Switch in Aicardi-Goutières Syndrome". Aicardi-Goutières syndrome (AGS) is a genetic ...
PyDESeq2 for differential expression analysis (DEA) with bulk RNA-seq data
PyDESeq2, a Python implementation of the DESeq2 method originally developed in R (click here) , is a versatile tool for conducting differential expressi...
Crafting Metabolic Models: A Guide for Robustness
To delve into the study of digital twins, one requires a meticulously crafted metabolic model to facilitate in-depth analysis. Unfortunately, the current state of metabolic models lacks uniformity and...
Perform knockout analysis
Simulation of gene knockout involves using computational techniques to predict the effects of inactivating genes within biological systems. By selectively deactivating specific genes, researchers can ...
How is it possible to add or remove reactions and metabolites within a metabolic model?
If you're looking to adjust reactions or metabolites within a metabolic network using Constellab, you are in the right place! The objective of this story is to outline various straightforward ta...
16s data analysis pipeline
In 2019, Pietrucci et al. published a study on gut microbiota dysbiosis in Parkinson's patients, analyzing 152 fecal samples from 80 patients and 72 healthy controls. The authors conducted 16S ...
How to merge two metabolic networks?
There are many methods for constructing genome-scale metabolic models, and many models have already been constructed and are available in public databases such as BiGG. Nevertheless, the lack of stan...