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Analyse your data with interactive dashboard using Streamlit!

Streamlit is a widely-used Python package that enables rapid development of data applications. It is renowned for its simplicity and efficiency, making it an ideal tool for creating interactive dashbo...

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Maëva Beugin
Jun 7, 2024

Constellab Contest Guidelines

The Constellab Contest isn't just a competition; it's a movement towards open source innovation and collective knowledge in the life sciences. Are you passionate about pushing the boundaries of knowle...

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Maëva Beugin
May 2, 2024

Single-cell RNA-Seq Analysis Pipeline

In 2023, Batignes et al. published an article intitled "Enhanced Inflammatory Signaling Driven by Metabolic Switch in Aicardi-Goutières Syndrome". Aicardi-Goutières syndrome (AGS) is a genetic ...

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Nour Larifi
Mar 21, 2024

PyDESeq2 for differential expression analysis (DEA) with bulk RNA-seq data

PyDESeq2, a Python implementation of the DESeq2 method originally developed in R (click here) , is a versatile tool for conducting differential expressi...

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Nour Larifi
Mar 14, 2024

Crafting Metabolic Models: A Guide for Robustness

To delve into the study of digital twins, one requires a meticulously crafted metabolic model to facilitate in-depth analysis. Unfortunately, the current state of metabolic models lacks uniformity and...

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Maëva Beugin
Apr 23, 2024

Perform knockout analysis

Simulation of gene knockout involves using computational techniques to predict the effects of inactivating genes within biological systems. By selectively deactivating specific genes, researchers can ...

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Maëva Beugin
Feb 27, 2024

How is it possible to add or remove reactions and metabolites within a metabolic model?

If you're looking to adjust reactions or metabolites within a metabolic network using Constellab, you are in the right place!  The objective of this story is to outline various straightforward ta...

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Maëva Beugin
Feb 22, 2024

16s data analysis pipeline

In 2019, Pietrucci et al. published a study on gut microbiota dysbiosis in Parkinson's patients, analyzing 152 fecal samples from 80 patients and 72 healthy controls. The authors conducted 16S ...

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Nour Larifi
Mar 14, 2024

How to merge two metabolic networks?

Introduction There are many methods for constructing genome-scale metabolic models, and many models

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Maëva Beugin
May 24, 2024

How to simulate digital twins of cellular metabolism from GEM models?

The purpose of this article is to present how to use digital twins of cellular metabolism in Constellab. We will see how to visualize a model in Constellab and how to predict cell growth. We start fro...

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Maëva Beugin
Feb 27, 2024