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Visualise a KEGG pathway coloured

MB
Maëva Beugin
Feb 14, 2024

Public
Live task description


This live task allows you to visualise a KEGG pathway in Constellab, coloured according to gene expression.



For more information, read this story. In this story you will find the dataset used and more explanation of the results.



Quickly, we used this dataset ("expression values across all genes") and in our case, we put these parameters as the parameter definition of the live task:


specie = "rno"
pathway_id = "00010"
type_gene_id = "symbol"
column_gene_id = "Gene_Name"
column_control = "native"
column_wild = "post_ex_vivo_lung_perfusion"

Latest version infos (V1)

Infos about this version

This version is the first version of the live task as published in this story



This live task allows you to visualise a KEGG pathway in Constellab, coloured according to gene expression.

Input
Output
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Authors
MB
Maëva Beugin