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Visualise a KEGG pathway coloured

Feb 14, 2024

Public
Agent description


This live task allows you to visualise a KEGG pathway in Constellab, coloured according to gene expression.



For more information, read this story. In this story you will find the dataset used and more explanation of the results.



Quickly, we used this dataset ("expression values across all genes") and in our case, we put these parameters as the parameter definition of the live task:


specie = "rno"
pathway_id = "00010"
type_gene_id = "symbol"
column_gene_id = "Gene_Name"
column_control = "native"
column_wild = "post_ex_vivo_lung_perfusion"

Latest version infos (V1)

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Authors
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Maëva B