Maëva B
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Stories - 15
Download NCBI data by linking to your query
The National Center for Biotechnology Information (NCBI), founded in 1988 as part of the National Library of Medicine (NLM), plays an important role in the ...
Contextualize your metabolic network using enzymatic data with BIOTA
Adding enzymatic parameters to a metabolic network model helps to improve the accuracy of simulations, to understand underlying mechanisms of reactions and to predict dynamic responses of the system t...
Analyse your data with interactive dashboards using Streamlit!
Streamlit is a widely-used Python package that enables rapid development of data applications. It is renowned for its simplicity and efficiency, making it an ideal tool for creating interactive dashbo...
Constellab Contest Guidelines
The Constellab Contest isn't just a competition; it's a movement towards open source innovation and collective knowledge in the life sciences. Are you passionate about pushing the boundaries of knowle...
Agents - 7
Transform a Network into a Cobra model
This live task allows you to convert a Network build with Constellab into a cobra model. In input, you can give a json File from the ouput of the network exporter task. You can apply cobra functions t...
Plot a heatmap with dendogram
This live task shows you how to quickly plot a heatmap combined with a dendogram in Constellab. Heatmaps are used when we have a lot of data because it is easier to interpret and distinguish raw value...
Plot a parallel coordinates plot
This live tasks shows you how to quickly plot an interactive parallel coordinates plot in Constellab. In a parallel coordinates plot with px.parallel_coordinates, each row of the DataFrame is represen...
Plot a ROC curve
This live task allows you to plot ROC curves depending on each condition (here there are 3 conditions). You need to provide a prediction table in the input. You can generate a prediction table using t...
Bricks - 3
gws_gena
GENA provides core features to create and use actionable digital twins of cell metabolism to understand and predict cell mechanisms of action.
gws_forms
Brick to generate dashboard form.
gws_biota
BIOTA is a unified and structured collection of omics data collected from official open European (EMBL-EBI) and NCBI taxonomy knowledge bases. More than 2 M organisms are referenced in BIOTA with their metabolic characteristics.