Reads trimming
Eliminate adapters and low quality reads
Trimmomatic is a software tool that is used to trim and filter high-throughput sequencing data. It can remove adapter sequences, low-quality reads, and other unwanted artifacts, improving the accuracy and quality of the data. It can be used with both single-end and paired-end sequencing data and is compatiblewith various sequencing platforms.
Input
Fastq folder
folder containing reads
Output
trimming
eliminate adapters
Configuration
threads
Number of threads
int2min_len
minimum length of reads to be kept
int35sequencing_type
sequencing type
stringPaired-end Single-end Forward_separator
forward fastq files
stringR1 1 Reverse_separator
Reverse fastq files
stringR2 2 5_prime_hard_trimming_read_size
Read size to trim in 5prime
int