Introduction Feature Frequency Table importer Feature Table importer Make metadata manifest Metagenome seq env task old_Q2FeatureInferenceSE Q2FeatureInferencePE Q2FeatureInferenceSE Q2GreengenesDiversity Q2NCBIDiversity Q2QualityCheck Q2RarefactionAnalysis Q2RDPDiversity Q2SilvaDiversity Qiime single-end sample frequencies Qiime1 env task Qiime2 ANCOM differential analysis Qiime2 env task Qiime2 feature frequencies (paired-end) Qiime2 manifest table exporter Qiime2 manifest table importer Qiime2 metadata table exporter Qiime2 metadata table importer Qiime2 metadata table maker Qiime2 rarefaction analysis Qiime2 taxa composition annotator Quality Table importer Rarefaction Table importer Taxonomy Table importer Taxonomy Table importer
Technical Documentation
Resources
Tasks
Qiime2 taxa composition annotator
Performs Qiime2 taxa composition annotator with a given db
Qiime2TableDbAnnotator class.
[Mandatory]: - taxa table coming from qiime2 taxa compo : Expcted format (included in the qiime2 diversity folder output object): index k__Bacteria;p__Fi;c__Clo;o__Clostri;f__toto;g__gege;s__titi sample_1 1205 sample_2 1705
- metadata file must follow specific nomenclature (columns are tab separated):
Expected format :
# tax_id annotation_info
bact_1 0
bact_2 1
bact_3 Variable;toto_1:0;others:1