Publication dateMar 9, 2022
Confidentiality public Public
Qiime2 taxa composition annotator
TASK
Typing name : TASK.gws_ubiome.Qiime2TableDbAnnotator Brick : gws_ubiome Performs Qiime2 taxa composition annotator with a given db
Qiime2TableDbAnnotator class.
[Mandatory]:
- taxa table coming from qiime2 taxa compo :
Expcted format (included in the qiime2 diversity folder output object):
index k__Bacteria;p__Fi;c__Clo;o__Clostri;f__toto;g__gege;s__titi
sample_1 1205
sample_2 1705
- metadata file must follow specific nomenclature (columns are tab separated):
Expected format :
bact_1 0
bact_2 1
bact_3 Variable;toto_1:0;others:1
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Input
Annotation_table
Annotation table: taxa<tabulation>info
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Output
Relative_Abundance_Annotated_Table
2d excel like table
Relative_Abundance_Annotated_Plotly_Resource
Plotly resource
Absolute_Abundance_Annotated_Table
2d excel like table
Absolute_Abundance_Annotated_Plotly_Resource
Plotly resource
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