Q2RarefactionAnalysis - gws_ubiome

Typing name : TASK.gws_ubiome.Qiime2RarefactionAnalysis

Brick : gws_ubiome

Drawing rarefaction curves for alpha-diversity indices

This task generates interactive alpha rarefaction curves by computing rarefactions between min_coverage and max_coverage. For Illumina sequencing with MiSeq sequencing platform, we recommand using 1,000 reads for min_coverage and 10,000 for max_coverage.

iteration refers as the number of rarefied feature tables to compute at each step. We recommand to use at least 10 iterations (default values).

Input

Folder

Output

Resource set

A set of resources

Resource set

Folder

Configuration

min_coverage

Optional

Minimum number of reads to test

Type : int

Default value : 20

max_coverage

Maximum number of reads to test. Near to median value of the previous sample frequencies is advised

Type : int

iteration

Optional

Number of iteration for the rarefaction step

Type : int

Default value : 10