Q2RarefactionAnalysis
Drawing rarefaction curves for alpha-diversity indices
This task generates interactive alpha rarefaction curves by computing rarefactions between min_coverage and max_coverage. For Illumina sequencing with MiSeq sequencing platform, we recommand using 1,000 reads for min_coverage and 10,000 for max_coverage.
iteration refers as the number of rarefied feature tables to compute at each step. We recommand to use at least 10 iterations (default values).
Input
Folder
Output
Resource set
A set of resources
Folder
Configuration
min_coverage
Minimum number of reads to test
int20max_coverage
Maximum number of reads to test. Near to median value of the previous sample frequencies is advised
intiteration
Number of iteration for the rarefaction step
int10