Publication dateMar 9, 2022
Confidentiality public Public
Q2RarefactionAnalysis
TASK
Typing name : TASK.gws_ubiome.Qiime2RarefactionAnalysis Brick : gws_ubiome Drawing rarefaction curves for alpha-diversity indices
This task generates interactive alpha rarefaction curves by computing rarefactions between min_coverage and max_coverage. For Illumina sequencing with MiSeq sequencing platform, we recommand using 1,000 reads for min_coverage and 10,000 for max_coverage.
iteration refers as the number of rarefied feature tables to compute at each step. We recommand to use at least 10 iterations (default values).
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Output
Resource set
A set of resources
settings
Configuration
Minimum number of reads to test
Type : intDefault value : 20Maximum number of reads to test. Near to median value of the previous sample frequencies is advised
Type : intNumber of iteration for the rarefaction step
Type : intDefault value : 10Technical bricks to reuse or customize
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