Create a metadata table (tab separator) from a fastq folder
Qiime2MetadataTableMaker class.
[Mandatory]: - fastq_folder must contains all fastq files (paired or not).
- Create metadata table from a fastq folder. User can add metadata information in a tab formated table after the first three columns:
For paired-end files :
#author:
#data:
#project:
#types_allowed:categorical or numeric
#metadata-type categorical categorical
sample-id forward-absolute-filepath reverse-absolute-filepath
sample-1 sample0_R1.fastq.gz sample1_R2.fastq.gz
sample-2 sample2_R1.fastq.gz sample2_R2.fastq.gz
sample-3 sample3_R1.fastq.gz sample3_R2.fastq.gz
For single-end files :
#author:
#data:
#project:
#types_allowed:categorical or numeric
#metadata-type categorical
sample-id absolute-filepath
sample-1 sample0.fastq.gz
sample-2 sample2.fastq.gz
sample-3 sample3.fastq.gz
Input
Folder_folder
FASTQ folder
Output
Metadata_file
Metadata file
Configuration
sequencing_type
Type of sequencing strategy [Respectively, options : paired-end, single-end]. Default = paired-end
string
paired-end
forward_file_differentiator
Paired-end sequencing forward file name differanciator, e.g: sample-A_R1.fastq.gz
string
_R1
reverse_file_differentiator
Paired-end sequencing forward file name differanciator, e.g: sample-A_R2.fastq.gz
string
_R2
metadata_file_name
Choose an output metadata file name
string
metadata.txt