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Sep 19, 2024

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Standalone Fermentalg Dashboard

TASK
Typing name :  TASK.gws_plate_reader.FermentalgStandaloneDashboard Brick :  gws_plate_reader

Standalone Streamlit dashboard for Fermentalg data

Standalone Fermentalg dashboard. No data persistence - temporary analysis only.

This dashboard provides visualization for Fermentalg plate reader data without requiring permanent data storage. Perfect for quick analysis and exploration of fermentation datasets.

The Fermentalg Dashboard is a Streamlit application designed for fermentation data visualization. It provides an interactive interface for interpreting QC0 data from Fermentalg experiments through various analytical workflows.

The aim is to simplify the use of the Fermentalg data processing by providing an application that makes uploading and visualizing fermentation data easier for temporary analysis sessions.

Features:

  • File Upload Interface: Upload CSV and ZIP files containing fermentation data
  • Data Processing: Automated processing using FermentalgLoadData task
  • Data Quality Assessment: Identification of missing values and incomplete datasets
  • Interactive Selection: Choose specific samples for detailed analysis
  • Data Visualization: Multiple chart types including time series, box plots, histograms, and scatter plots
  • Statistical Analysis: Descriptive statistics and data summaries
  • Batch Analysis: Compare different fermentation batches and fermentor conditions

Required Input Files:

  • Info CSV: Contains experiment information and metadata
  • Raw Data CSV: Contains raw measurement data
  • Medium CSV: Contains medium composition information
  • Follow-up ZIP: Archive with additional time-series data

Note: This is a standalone version that doesn't persist data between sessions. All uploaded files and analysis results are temporary and will be lost when the session ends.

Output

Fermentalg Standalone Dashboard
Streamlit app
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