GSEA_GO_enrichment

GseaGoTerm class.

A class that wraps the PyGSEA library for performing Gene Set Enrichment Analysis (GSEA) on gene list data.

PyGSEA is an open-source Python library for performing gene set enrichment analysis using various databases of gene sets, including the Gene Ontology (GO) database.

More information here: https://github.com/zqfang/gseapy

[Mandatory]: - Gene list file must contains genes, one per line.

- The Gene Matrix Transposed (GMT) file format, also known as gene univers file
    which is a tab-delimited text file format where each row represents a gene set,
    and the first column is the name of the gene set, followed by a description,
    and then a list of genes that belong to that set.

Here's are examples of a GMT file and Gene list file for performing GO term enrichment analysis:

    - Gene list files :
        Gene_0102
        Gene_0708
        ...
        Gene_0909


    - Gene universe file (tab separated) :
        # Gene ontology enrichment analysis
        Gene_0001   NA   GO:0008150  GO:0009987  GO:0016192  GO:0050896
        Gene_0002      Here is a description of the gene   GO:0008150  GO:0009987
        Gene_0003   NA   GO:0050896
        ...
        Gene_2305   NA