Introduction Base omix env task Base r env task Blast ec list extractor Blast to EC-number Annotator Deep ec Deep ec env task Deep ec list extractor DESeq2 pairwise differential analysis ECListMerger Feature Counts Genome by mapping assembly pipeline Gmap align gtf Gmap index GSEA_GO_enrichment HTSeqCount Inter pro scan env task Py gsea env task Salmon index Salmon quant mapping Star index Star mapping genome reads Star mapping transcriptome reads Subread env task Top go2 env task TopGO2_GO_enrichment Trim fq env task TrimGalore cleaning
Technical Documentation
Resources
Tasks
Deep ec list extractor
Extracts an EC list from a DeepECFile
DeepECListExtractor class.
Extracts an EC list from a DeepECFile for Digital Twins reconstructions.
DeepECListExtractor output file format (2 Columns): Query ID and Predicted ec number (header in file)
Query ID Predicted EC number Mycgr3P87220 EC:2.7.1.24 Mycgr3P42503 EC:3.2.1.3 Mycgr3P66454 EC:3.1.1.3 Mycgr3P65205 EC:1.2.1.3