Blast ec list extractor
Extracts an EC list from a BlastECFile
BlastECListExtractor class.
Extracts an EC list from a BlastECFile
for Digital Twins reconstructions.
Keeps only the best hit for each previously analysed sequence.
BlastECListExtractor output file format (18 Columns) : qaccver saccver pident qcovs qcovhsp length mismatch gapopen qstart qend qlen sstart send slen evalue bitscore alignment_type ec_number (NO header in file)
sp|P87228|SERA_SCHPO sp|P87228|SERA_SCHPO 100.000 100 100 466 0 0 1 466 466 1 466 466 0.0 954 BEST_HIT 1.1.1.95; 1.1.1.399 sp|Q75DK1|SEC14_ASHGO sp|Q75DK1|SEC14_ASHGO 100.000 100 100 308 0 0 1 308 308 1 308 308 0.0 637 BEST_HIT NA sp|Q75DK1|SEC14_ASHGO sp|P24859|SEC14_KLULA 82.724 98 98 301 52 0 1 301 308 1 301 301 0.0 528 SECONDARY_HITS NA sp|Q75DK1|SEC14_ASHGO sp|P53989|SEC14_CANGA 80.066 98 98 301 60 0 1 301 308 1 301 302 0.0 502 SECONDARY_HITS NA sp|A3LZ57|SEC16_PICST sp|A3LZ57|SEC16_PICST 100.000 100 100 2212 0 0 1 2212 2212 1 2212 2212 0.0 4490 BEST_HIT NA