Functions
build_twin_from_sub_context
base_twin :
Twin index :
int Return type :
Twin compute_elementary_flux_modes @classmethod
Compute elementary flux modes
flat_twin :
FlatTwin reversibilities :
Any ignore_cofactors :
bool - False Return type :
DataFrame compute_nullspace @classmethod
Compute the null space of th stoichimetric matrix
N :
DataFrame Return type :
DataFrame compute_reduced_matrices @classmethod
Compute the reduced matrices
flat_twin :
FlatTwin use_context :
bool - True reversibilities :
Any ignore_cofactors :
bool - False Return type :
ReducedMatrices create_fba_problem @classmethod
Creates a FBA problem using a biomdel object
flat_twin :
FlatTwin A flat twin object
Return type :
FBAProblem create_input_stoichiometric_matrix @classmethod
Creates the input-substrate stoichiometric matrix using a twin object
flat_twin :
FlatTwin A flat twin object
ignore_cofactors :
bool - False Return type :
DataFrame create_non_steady_stoichiometric_matrix @classmethod
Creates the non_steady stoichiometric matrix using a twin object
flat_twin :
FlatTwin A flat twin object
Return type :
DataFrame create_observation_matrices @classmethod
Creates the observation matrices (i.e. such as C * y = b, where b is measurement vector)
flat_twin :
FlatTwin A flat twin object
Return type :
ObsvMatrices create_output_stoichiometric_matrix @classmethod
Creates the output-product stoichiometric matrix using a twin object
flat_twin :
FlatTwin A flat twin object
ignore_cofactors :
bool - False Return type :
DataFrame create_steady_stoichiometric_matrix @classmethod
Creates the steady stoichiometric matrix using a twin object
flat_twin :
FlatTwin A flat twin object
ignore_cofactors :
bool - False Return type :
DataFrame create_stoichiometric_matrix @classmethod
Creates the full stoichiometric matrix using a twin object
flat_twin :
FlatTwin A flat twin object
Return type :
DataFrame