Compartment

Initialize self. See help(type(self)) for accurate signature.

Deep copy the compartment

Dumps as JSON

Test if the compartment is the biomass compartment

: return: True if the compartment is the biomass compartment, False otherwise : rtype: bool

Test if the compartment is the cytosol compartment

: return: True if the compartment is the cytosol compartment, False otherwise : rtype: bool

Test if the compartment is extracellular

: return: True if the compartment is extracellular, False otherwise : rtype: bool

Test if the compartment is extracellular region (environment)

: return: True if the compartment is extracellular region (environment), False otherwise : rtype: bool

Test if the compartment is intracellular

: return: True if the compartment is intracellular, False otherwise : rtype: bool

Test if the compartment is a sink compartment

: return: True if the compartment is a sink compartment, False otherwise : rtype: bool

Loads from as JSON

Create bioamss compartment

Create cytosol compartment

Create extracellular space compartment

Create extracellular region (environment) compartment

Create nucleus compartment

Create unknown/other compartment

Create extracellular space compartment

Returns True if the compartment exists

Loads from biota using its go_id or bigg_id The go_id is tested in priority if provied