Pathway db creator

Typing name : TASK.gws_biota.PathwayDBCreator

Brick : gws_biota

Download the online files from rgd.mcw.edu and reactome databases and use them to load the “biota_pathway” table from the BIOTA database.

Base class

Text

Resource that holds a text

Optional

Text

Resource that holds a text

Optional

pwo_file

Optional

Type : string

Default value : https://download.rgd.mcw.edu/ontology/pathway/pathway.obo

reactome_pathways_file

Optional

Type : string

Default value : https://reactome.org/download/current/ReactomePathways.txt

reactome_pathway_relations_file

Optional

Type : string

Default value : https://reactome.org/download/current/ReactomePathwaysRelation.txt

reactome_chebi_pathways_file

Optional

Type : string

Default value : https://reactome.org/download/current/ChEBI2Reactome.txt

Have you developed a brick?