Login

Convert gene names to gene IDs

NL
Nour Larifi
Feb 28, 2024

Public
Live task description

This livetask streamlines the process of converting gene names to gene IDs by leveraging the MyGeneInfo API and pandas library in Python. It takes a list of gene names stored in a csv format as input.


Latest version infos (V1)

Infos about this version

This script streamlines the process of converting gene names to gene IDs by leveraging the MyGeneInfo API and pandas library in Python. 


It takes a list of gene names as input and queries the MyGeneInfo API to retrieve the corresponding gene IDs. The query is performed using the querymany() method with parameters specifying the gene symbol scope, desired fields (gene ID), species (human), and returns all results.


Input
Output
File or folder
Optional
Resource
Environment file
Code
Authors
NL
Nour Larifi