Convert gene names to gene IDs

Versions list

Overview Version 1

Necessary bricks

Contributor(s)

Nour L

Publication date

Feb 28, 2024

Confidentiality

Public

Reactions

Description of the agent

This livetask streamlines the process of converting gene names to gene IDs by leveraging the MyGeneInfo API and pandas library in Python. It takes a list of gene names stored in a csv format as input.

Latest version infos (V1)

This script streamlines the process of converting gene names to gene IDs by leveraging the MyGeneInfo API and pandas library in Python.

It takes a list of gene names as input and queries the MyGeneInfo API to retrieve the corresponding gene IDs. The query is performed using the querymany() method with parameters specifying the gene symbol scope, desired fields (gene ID), species (human), and returns all results.

Input(s)

File or folder

Optional

Fs node

Output(s)

Resource

Environment file

Code

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