Computing various diversity index and taxonomy assessement of ASVs using RDP
This task classifies reads by taxon using a pre-fitted sklearn-based taxonomy classifier. By default, we suggest a pre-fitted Naive Bayes classifier for the database RDP (in version 18).
Minimum required configuration: Digital lab SC2
About RDP: Ribosomal Database Project (RDP; http://rdp.cme.msu.edu/) provides the research community with aligned and annotated rRNA gene sequence data.
Depth of coverage when reaching the plateau of the curve on the previous step
Database for taxonomic affiliation
Number of threads