Publication dateMar 9, 2022
Confidentiality public Public
ITS Funfun Functional Analysis Prediction
TASK
Typing name : TASK.gws_ubiome.ItsFunfunFunctionalAnalysis Brick : gws_ubiome This task permit to predict functional analysis of ITS fungal data using FunFun
FunFun (Fungal Functional predictor) is the tool allows us to evaluate the gene content of an individual fungus or mycobiome based on ITS-amplicon sequencing data.
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Input
ASV_count_abundance
File containing the abundance of each ASV across each sample
FASTA_of_amplicon_sequences_variants
This file contain FASTA of amplicon sequences variants
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Output
funfun_out_pipeline
This folder contain the outputs
settings
Configuration
ITS type
Type : stringAllowed values : its1 its2 Technical bricks to reuse or customize
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