PValue adjust

Test and adjust (correct) p-value for multiple tests

• Input: a table containing lists of p-values.

• Output: a table containing lists of corrected p-values.

• Config Parameters:

  • alpha (float between 0 and 1): FWER, family-wise error rate, e.g. 0.1. Except for fdr_twostage, the p-value correction is independent of the alpha specified as argument

  • methods: Method used for testing and adjustment of pvalues. Can be either the full name or initial letters. Available methods are:

    • bonferroni: one-step correction
    • fdr_bh: Benjamini/Hochberg (non-negative)
    • fdr_by: Benjamini/Yekutieli (negative)
    • fdr_tsbh: two stage fdr correction (non-negative)
    • fdr_tsbky: two stage fdr correction (non-negative)
    • sidak: one-step correction
    • holm-sidak: step down method using Sidak adjustments
    • holm: step-down method using Bonferroni adjustments
    • simes-hochberg: step-up method (independent)
    • hommel: closed method based on Simes tests (non-negative)

For more details, see https://www.statsmodels.org/dev/generated/statsmodels.stats.multitest.multipletests.html