One-way ANOVA
Test that two or more groups have the same population mean
Compute the one-way ANOVA test for multiple samples.
The one-way ANOVA tests the null hypothesis that two or more groups have the same population mean. The test is applied to samples from two or more groups, possibly with differing sizes. It is a parametric version of the Kruskal-Wallis test.
The ANOVA has important assumptions that must be satisfied in order for the associated p-value to be valid:
The samples are independent.
Each sample is from a normally distributed population.
The population standard deviations of the groups are all equal.This property is known as homoscedasticity. If these assumptions are not true for a given set of data, it may still be possible to use the Kruskal-Wallis H-test or the Alexander-Govern test although with some loss of power.
Input: a table containing the sample measurements, with the name of the samples.
Output: a table listing the correlation coefficient, and its associated p-value for each pairwise comparison testing.
Config Parameters:
preselected_column_names: List of columns to pre-select for pairwise comparisons. By default a maximum pre-defined number of columns are selected (see configuration).row_tag_key: If give, this parameter is used for group-wise comparisons along row tags (see example below).
Example 1: Direct column comparisons
Let's say you have the following table.
| A | B | C |
|---|---|---|
| 1 | 5 | 3 |
| 2 | 6 | 8 |
| 3 | 7 | 5 |
| 4 | 8 | 4 |
This task performs population comparison of almost all the columns of the table
(the first 500 columns are pre-selected by default).
Example 2: Advanced comparisons along row tags using row_tag_key parameter
In general, the table rows represent real-world observations (e.g. measured samples) and columns correspond to descriptors (a.k.a features or variables). Theses rows (samples) may therefore be related to metadata information given by row tags as follows:
| row_tags | A | B | C |
|---|---|---|---|
| Gender : M Age : 10 |
1 | 5 | 3 |
| Gender : F Age : 10 |
2 | 6 | 8 |
| Gender : F Age : 10 |
8 | 7 | 5 |
| Gender : X Age : 20 |
4 | 8 | 4 |
| Gender : X Age : 10 |
2 | 7 | 5 |
| Gender : M Age : 20 |
4 | 1 | 4 |
Actually, the column row_tags does not really exist in the table. It is just to show here the tags of the rows
Here, the first row correspond to 10-years old male individuals.
In this this case, we may be interested in only comparing several columns along row metadata tags.
For instance, to compare gender populations M, F, X for each columns separately, you can therefore use the advance parameter row_tag_key=Gender.
For more details, see https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.f_oneway.html
Input
Output
Configuration
preselected_column_names
The names of column to pre-select for comparison. By default, the first 500 columns are used
List-1name
The name of the column(s) to pre-select
stringis_regex
Set True if it is a text pattern (regular expression), False otherwise
boolrow_tag_key
The key of the row tag (representing the group axis) along which one would like to compare each column
stringadjust_pvalue
Adjust p-values for multiple tests. It is only used when the `row_tag_key` is set.
List1method
The method used to adjust (correct) p-values
stringbonferroni fdr_bh fdr_by fdr_tsbh fdr_tsbky sidak holm-sidak holm simes-hochberg hommel bonferronialpha
FWER, family-wise error rate Default is 0.05
float0.05