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Sep 19, 2024

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Generate BiolectorXT Cell Culture Dashboard app

TASK
80 times
100 %
84 milliseconds
Typing name :  TASK.gws_plate_reader.GenerateBiolectorCellCultureDashboard Brick :  gws_plate_reader

Create a Streamlit dashboard for BiolectorXT microplate data analysis

Task that generates the BiolectorXT Cell Culture Dashboard app. This dashboard provides visualization and analysis capabilities for BiolectorXT microplate data.

The BiolectorXT Cell Culture Dashboard is a Streamlit application designed for fermentation data analysis and visualization from BiolectorXT microplate readers. It provides an interactive interface for processing, analyzing, and interpreting data from BiolectorXT experiments through various analytical workflows.

The aim is to simplify the use of the BiolectorXT data processing by providing an application that makes uploading, processing, and visualizing microplate fermentation data easier.

Features:

  • File Upload Interface: Upload BiolectorXT raw data tables, metadata folders, and optional plate layouts
  • Data Processing: Automated processing using BiolectorXTLoadData task
  • Data Quality Assessment: Identification of missing values and incomplete datasets via Venn diagrams
  • Interactive Selection: Choose specific wells for detailed analysis
  • Data Visualization: Multiple chart types including time series, box plots, histograms, and scatter plots
  • Statistical Analysis: Descriptive statistics and data summaries
  • Microplate Analysis: Support for microplate-specific recipes and workflows
  • Metadata Extraction: ML-ready metadata tables for feature extraction

Required Input Files:

  • Raw Data Table: CSV file containing BiolectorXT data with Well, Filterset, Time, Cal columns
  • Metadata Folder: ZIP file containing the BXT.json metadata file
  • Plate Layout (Optional): JSON file with custom well labels and metadata

The dashboard automatically processes uploaded files, identifies data quality issues, and provides an intuitive interface for selecting and visualizing specific datasets of interest for detailed analysis.

Output

BiolectorXT Cell Culture Dashboard
Streamlit app
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