Publication dateSep 19, 2024
Confidentiality public Public
Prepare Cell Culture Feature Metadata Table
TASK
Typing name : TASK.gws_plate_reader.CellCulturePrepareFeatureMetadataTable Brick : gws_plate_reader Prepares merged feature-metadata table for UMAP analysis
Prepares the merged feature-metadata table for dimensionality reduction analysis.
This task:
- Removes non-numeric columns (except the medium name column if specified)
- Fills NaN values with 0
- Keeps only the columns needed for UMAP analysis
Inputs:
- feature_metadata_table: Merged table from CellCultureMergeFeatureMetadata
Outputs:
- ready_feature_metadata_table: Cleaned table ready for UMAP
Configuration:
- medium_name_column: Name of the column containing medium names (will be kept for coloring in UMAP)
The output table contains only numeric features plus the medium name column,
making it suitable for direct input to UMAP analysis.
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Input
Feature Metadata Table
2d excel like table
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Output
Prepared Feature Metadata Table
2d excel like table
settings
Configuration
medium_name_column
Optional
Name of the column containing medium names (kept for UMAP coloring)
Type : stringDefault value : MediumTechnical bricks to reuse or customize Have you developed a brick?
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