Salmon quant mapping
SalmonQuantMapping class. Represents a process that wraps Salmon pseudo-aligment RNAseq mapping program (salmon quant).
Configuration options
* threads: Multi threading options: number of threads to use (min=2). [Default = 2].
Input
FastqFolder
Fastq Folder containing all RNA-sequencing file
MetadataFile
File containing metadata information link to file and sample (see Gencovery hub documentation at: https://hub.gencovery.com/bricks/gws_omix/latest/doc/use-cases/undefined )
SalmonIndex
Folder containing Salmon index files
Output
TpmCountFile
Tpm genes expression counting files merged in one (see salmon quantmerge documentation)
RawCountFile
Raw count genes expression counting files merged in one (see salmon quantmerge documentation)
Configuration
threads
Number of threads [Default = 2]
int2