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Star mapping transcriptome reads

TASK
Typing name :  TASK.gws_omix.STARMappingTranscriptomeReads Brick :  gws_omix v Parent : 

STARMappingTranscriptomeReads class. Represents a process that wraps STAR program.

Mapping is done on the whole genome sequence but only reads overlapping gene feature are kept.

--> THIS BAM OUTPUT FOLDER !!! IS !!! COMPATIBLE WITH SALMON QUANTIFICATION TOOL (see SalmonQuantStar class) <---

Configuration options * threads: Multi threading options: number of threads to use (min=1, max=7). [Default = 2]. * memory: Memory (RAM in Bytes) usage in Bytes. [Default = 4000000000 bytes (=4GB)].

Input

Output

Configuration

threads

Optional

Number of threads [Default = 2]

Type : intDefault value : 2

memory

Optional

Memory (RAM in Bytes) usage

Type : intDefault value : 6000000000