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Star index

TASK
Typing name :  TASK.gws_omix.STARIndex Brick :  gws_omix v Parent : 

STAR index class. Represents a process that wraps STAR indexing genome process. This is a mandatory step for RNAseq mapping.

Configuration options * threads: Multi threading options: number of threads to use (min=1, max=7). [Default = 4]. * memory: Memory (RAM in Bytes) usage in Bytes. (min=8000000000 bytes, 8 GB) [Default = 48000000000 bytes (48 000 000 000 Bytes = 48 GB)]. * read_size': Reads size minus 1 in bp (ex. 150 bp --> 150 - 1 = 149)". [MANDATORY]

Input

Output

Configuration

threads

Optional

Number of threads [Default = 2]

Type : intDefault value : 2

memory

Optional

Memory (RAM in Bytes) usage

Type : intDefault value : 2000000000

read_size

Reads size minus 1 (in bp; ex.: 150pb reads --> 149)

Type : int