Functional enrichment analysis based on ORA

Typing name : TASK.gws_omix.ORAEnrichmentMultiSpecies

Brick : gws_omix

g:Profiler ORA of DE genes — tables, PNG barplots, and an interactive Terms×Genes grid.

This script performs functional enrichment analysis (ORA) on a list of DEGs using g:Profiler, testing for over-represented GO/KEGG terms via a hypergeometric test with g:SCS multiple-testing correction. We use the auto background (genome-wide) to stay consistent with the g:Profiler web interface. Results include filtered CSV tables and barplots of significant terms. See the full documentation on Cnostellab Community : https://constellab.community/bricks/gws_omix/latest/doc/use-cases/functional-enrichment-analysis/

Input

DE/Full results CSV (must contain an ID column)

File

Output

ORA tables

A set of resources

Resource set

Barplots (top-N)

A set of resources

Resource set

Interactive Terms×Genes

A set of resources

Resource set

Configuration

organism_name

Scientific name (select from list).

Type : string

Allowed values :

Daucus carota subsp. sativus
Bombus terrestris
Teladorsagia circumcincta
Ananas comosus
Triticum aestivum
Juglans regia
Angiostrongylus cantonensis
Bactrocera latifrons
Drosophila ficusphila
Petromyzon marinus
Trichinella murrelli
Bicyclus anynana
Pyrenophora teres f. teres 0-1
Linhomoeus sp. GSCO2_2
Poecilia latipinna
Trichobilharzia regenti
Cajanus cajan
Ciona intestinalis
Hermetia illucens
Schistosoma intercalatum
Caenorhabditis nigoni
Steinernema carpocapsae
Atriophallophorus winterbourni
Mesocricetus auratus
Nematostella vectensis
Parastrongyloides trichosuri
Erpetoichthys calabaricus
Anneissia japonica
Vitis vinifera
Schistosoma curassoni
Jaculus jaculus
Anopheles atroparvus
Anopheles dirus
Parapristionchus giblindavisi
Schistosoma haematobium
Paragonimus kellicotti
Fusarium graminearum
Laticauda laticaudata
Thelazia callipaeda
Zymoseptoria tritici IPO323
Schistosoma rodhaini
Phytophthora lateralis MPF4
Arabis alpina
Macaca nemestrina
Lupinus angustifolius
Solenopsis invicta
Dimorphilus gyrociliatus
Lutzomyia longipalpis
Elaeophora elaphi
Bemisia tabaci
Macrosteles quadrilineatus
Marmota marmota marmota
Ailuropoda melanoleuca
Microctonus aethiopoides
Oryzias melastigma
Globodera rostochiensis
Mizuhopecten yessoensis
Echinococcus granulosus
Varroa destructor
Oryza glaberrima
Oryzias latipes
Oryza sativa aus subgroup
Schistosoma margrebowiei
Drosophila innubila
Plasmodium vivax
Manduca sexta
Heterodera schachtii
Vicia faba
Diploscapter pachys
Lingula anatina
Panthera pardus
Aspergillus terreus NIH2624
Dreissena polymorpha
Vigna radiata var. radiata
Sus scrofa
Caenorhabditis quiockensis
Anas platyrhynchos
Caenorhabditis waitukubuli
Anoplophora glabripennis
Cynoglossus semilaevis
Aphelenchoides fujianensis
Steinernema feltiae
Cylicocyclus nassatus
Drosophila hydei
Vombatus ursinus
Takifugu rubripes
Strongyloides papillosus
Secale cereale
Felis catus
Dicentrarchus labrax
Naja naja
Machimus atricapillus
Oncorhynchus mykiss
Caenorhabditis tropicalis
Anolis carolinensis
Galdieria sulphuraria
Arabidopsis thaliana
Oryza longistaminata
Spirometra erinaceieuropaei
Levipalatum texanum
Paragonimus westermani
Trichuris suis
Vicugna pacos
Oryza sativa Indica Group
Struthio camelus australis
Lottia gigantea
Oreochromis niloticus
Ditylenchus destructor
Paragonimus heterotremus
Quercus lobata
Rhynchonema sp. JSB1_4
Eremothecium gossypii ATCC 10895
Drosophila mojavensis
Ditylenchus dipsaci
Heligmosomoides polygyrus
Lolium perenne
Aquila chrysaetos chrysaetos
Brassica napus
Actinia tenebrosa
Theobroma cacao
Pediculus humanus corporis
Danaus plexippus plexippus
Globodera pallida
Caenorhabditis zanzibari
Lucilia cuprina
Fasciola hepatica
Xenopus tropicalis
Fusarium fujikuroi
Hydra vulgaris
Carassius auratus
Schistocerca serialis cubense
Microtus ochrogaster
Stegodyphus mimosarum
Glossina brevipalpis
Drosophila persimilis
Pan troglodytes
Beauveria bassiana
Thalassiosira pseudonana CCMP1335
Drosophila guanche
Melitaea cinxia
Trichinella pseudospiralis
Caenorhabditis briggsae
Drosophila yakuba
Brachypodium distachyon
Heterocephalus glaber
Acyrthosiphon pisum
Caenorhabditis elegans
Meloidogyne incognita
Bursaphelenchus xylophilus
Trichinella patagoniensis
Paramecium tetraurelia
Setaria viridis
Helianthus annuus
Echinostoma caproni
Amphimedon queenslandica
Lytechinus pictus
Corylus avellana
Daktulosphaira vitifoliae
Anthonomus grandis grandis
Dothistroma septosporum NZE10
Panagrolaimus sp. JU765
Terrapene triunguis
Anopheles arabiensis
Sarcoptes scabiei
Caenorhabditis tribulationis
Pollicipes pollicipes
Cherax quadricarinatus
Dioscorea cayenensis subsp. rotundata
Schistosoma mattheei
Amborella trichopoda
Neogale vison
Strongylocentrotus purpuratus
Canis lupus familiaris
Haliotis rufescens
Adelges cooleyi
Centruroides sculpturatus
Onchocerca ochengi
Oncorhynchus tshawytscha
Oryza sativa Japonica Group
Schistocerca gregaria
Varroa jacobsoni
Myopa tessellatipennis
Eriocheir sinensis
Phaseolus vulgaris
Litomosoides sigmodontis
Aspergillus nidulans FGSC A4
Syphacia muris
Drosophila virilis
Phanerochaete chrysosporium RP-78
Ixodes scapularis
Bombyx mandarina
Taenia multiceps
Strongylus vulgaris
Salmo trutta
Glossina morsitans morsitans
Anopheles melas
Tetranychus urticae
Aphidius gifuensis
Glossina palpalis gambiensis
Rhodnius prolixus
Drosophila simulans
Cavia porcellus
Acropora millepora
Eragrostis tef
Necator americanus
Schistosoma bovis
Pristionchus arcanus
Schistosoma turkestanicum
Mus spretus
Panonychus citri
Physcomitrium patens
Priapulus caudatus
Diplogasteroides magnus
Digitaria exilis
Trichinella nativa
Drosophila eugracilis
Catagonus wagneri
Angiostrongylus vasorum
Cercopithifilaria johnstoni
Mercenaria mercenaria
Cynara cardunculus var. scolymus
Cryptococcus deneoformans JEC21
Tetrahymena thermophila SB210
Halicephalobus mephisto
Cannabis sativa
Rhinolophus ferrumequinum
Drosophila sechellia
Athalia rosae
Pristionchus mayeri
Auanema sp. JU1783
Otolemur garnettii
Verticillium dahliae VdLs.17
Panagrolaimus sp. ES5
Solanum tuberosum
Drosophila arizonae
Phocoena sinus
Enoplolaimus lenunculus
Pristionchus maxplancki
Nakaseomyces glabratus CBS 138
Physeter macrocephalus
Aethina tumida
Avena sativa
Caenorhabditis inopinata
Anas platyrhynchos platyrhynchos
Caenorhabditis uteleia
Trichuris muris
Hippocampus comes
Salvator merianae
Diuraphis noxia
Canis lupus dingo
Trichogramma pretiosum
Drosophila biarmipes
Galleria mellonella
Cyprinus carpio carpio
Acanthaster planci
Macrostomum lignano
Phytophthora sojae
Trissonchulus sp. WLG1_4
Parastagonospora nodorum SN15
Saccharomyces cerevisiae S288C
Schistosoma japonicum
Seriola dumerili
Tursiops truncatus
Strongyloides ratti
Cyprinodon variegatus
Helicoverpa zea
Hordeum vulgare subsp. vulgare
Haplochromis burtoni
Dictyocaulus viviparus
Hyalella azteca
Macaca fascicularis
Coremacera marginata
Limnephilus lunatus
Marchantia polymorpha
Entamoeba histolytica HM-1:IMSS
Tetraodon nigroviridis
Lepisosteus oculatus
Lepeophtheirus salmonis
Dendronephthya gigantea
Mayetiola destructor
Plasmodium chabaudi chabaudi
Trichinella nelsoni
Teleopsis dalmanni
Gossypium raimondii
Loa loa
Nasonia vitripennis
Oryza sativa tropical japonica subgroup
Caenorhabditis parvicauda
Taenia asiatica
Diabrotica virgifera virgifera
Eutrema salsugineum
Larimichthys crocea
Rhopalosiphum maidis
Candidozyma duobushaemuli
Schistocerca nitens
Sorghum bicolor
Heterobilharzia americana
Apis mellifera
Owenia fusiformis
Agrilus planipennis
Beta vulgaris subsp. vulgaris
Cebus imitator
Meloidogyne graminicola
Ascaris lumbricoides
Prunus dulcis
Pomacea canaliculata
Meloidogyne enterolobii
Halicephalobus sp. NKZ332
Halyomorpha halys
Albugo laibachii Nc14
Drosophila busckii
Adineta vaga
Saccharum spontaneum
Xiphophorus couchianus
Opisthorchis felineus
Meloidogyne arenaria
Lactuca sativa
Aspergillus flavus NRRL3357
Glossina pallidipes
Chelonus insularis
Chondrus crispus
Saccoglossus kowalevskii
Sorex araneus
Pyricularia oryzae 70-15
Candidozyma haemuli
Anopheles funestus
Ichneumon xanthorius
Rhagoletis pomonella
Drosophila pseudoobscura
Trialeurodes vaporariorum
Aphelenchoides besseyi
Amphiprion ocellaris
Glyphotaelius pellucidus
Ixodes persulcatus
Caenorhabditis panamensis
Salmo salar
Leishmania major strain Friedlin
Actinia equina
Panagrellus redivivus
Steinernema glaseri
Manihot esculenta
Leersia perrieri
Sciurus vulgaris
Nymphaea colorata
Heterodera glycines
Drosophila elegans
Toxocara canis
Candida parapsilosis CDC317
Solanum lycopersicum
Bactrocera dorsalis
Prunus avium
Trichinella sp. T9
Limnephilus marmoratus
Wuchereria bancrofti
Bison bison bison
Aspergillus fischeri NRRL 181
Micoletzkya japonica
Puccinia striiformis f. sp. tritici PST-130
Trypanosoma brucei
Erinaceus europaeus
Plasmodium falciparum 3D7
Trichinella spiralis
Bos mutus
Aspergillus clavatus NRRL 1
Clonorchis sinensis
Lineus longissimus
Anopheles christyi
Oryza glumipatula
Rhabditophanes sp. KR3021
Denticeps clupeoides
Galendromus occidentalis
Capsicum annuum
Phlebotomus papatasi
Schmidtea mediterranea
Geospiza fortis
Brugia malayi
Astyanax mexicanus
Dinothrombium tinctorium
Selaginella moellendorffii
Hyaloperonospora arabidopsidis Emoy2
Gigantopelta aegis
Globisporangium ultimum DAOM BR144
Pseudo-nitzschia multistriata
Ancylostoma ceylanicum
Myripristis murdjan
Serinus canaria
Gadus morhua
Citrullus lanatus
Opisthorchis viverrini
Ictidomys tridecemlineatus
Cyclopterus lumpus
Ctenocephalides felis
Electrophorus electricus
Clupea harengus
Populus trichocarpa
Plasmodium knowlesi strain H
Limnephilus rhombicus
Guillardia theta CCMP2712
Heliconius melpomene
Dibothriocephalus latus
Hucho hucho
Acrobeloides nanus
Mustela putorius furo
Nomascus leucogenys
Ustilago maydis
Prunus persica
Pectinophora gossypiella
Oryzias sinensis
Ooceraea biroi
Caenorhabditis remanei
Paragonimus skrjabini miyazakii
Meloidogyne floridensis
Harpegnathos saltator
Ascaris suum
Ovis aries
Orbicella faveolata
Globisporangium irregulare DAOM BR486
Bos indicus x Bos taurus
Panicum hallii
Pristionchus entomophagus
Caenorhabditis auriculariae
Phytopythium vexans DAOM BR484
Dendroctonus ponderosae
Gasterosteus aculeatus aculeatus
Schizosaccharomyces japonicus yFS275
Patiria miniata
Meloidogyne chitwoodi
Biomphalaria glabrata
Oryza rufipogon
Aedes albopictus
Dracunculus medinensis
Gyrodactylus bullatarudis
Medicago truncatula
Danio rerio
Carlito syrichta
Sabatieria punctata
Saimiri boliviensis boliviensis
Octopus bimaculoides
Panagrolaimus davidi
Microctonus hyperodae
Musa acuminata subsp. malaccensis
Leptotrombidium deliense
Bos grunniens
Brassica juncea
Sesamum indicum
Anopheles quadriannulatus
Oesophagostomum dentatum
Onchocerca flexuosa
Ficedula albicollis
Lytechinus variegatus
Equus asinus
Aspergillus fumigatus A1163
Globisporangium iwayamae DAOM BR242034
Ancylostoma duodenale
Phytophthora kernoviae 00238/432
Paramacrobiotus metropolitanus
Equus caballus
Microbotryum lychnidis-dioicae p1A1 Lamole
Zea mays
Drosophila albomicans
Phytophthora infestans T30-4
Drosophila takahashii
Phytophthora ramorum
Botrytis cinerea B05.10
Haemonchus contortus
Gyrodactylus salaris
Notechis scutatus
Steinernema hermaphroditum
Nannospalax galili
Crocodylus porosus
Dermatophagoides pteronyssinus
Brugia pahangi
Coturnix japonica
Ancylostoma caninum
Ursus maritimus
Panicum hallii var. hallii
Schizosaccharomyces octosporus yFS286
Penaeus vannamei
Bradynema listronoti
Drosophila navojoa
Parus major
Dictyostelium discoideum AX4
Macaca mulatta
Nicotiana attenuata
Arabidopsis lyrata subsp. lyrata
Heterorhabditis bacteriophora
Quercus suber
Exaiptasia diaphana
Stylophora pistillata
Fusarium verticillioides 7600
Dipodomys ordii
Portunus trituberculatus
Thrips palmi
Melampsora larici-populina 98AG31
Trichinella sp. T8
Habropoda laboriosa
Camelina sativa
Ostrea edulis
Pteropus vampyrus
Anopheles gambiae
Malus domestica
Bombus huntii
Tribolium madens
Drosophila grimshawi
Cottoperca gobio
Theristus sp. LFF4_11
Leptinotarsa decemlineata
Cimex lectularius
Camponotus floridanus
Anopheles sinensis
Rodentolepis nana
Melanaphis sacchari
Scophthalmus maximus
Chelonoidis abingdonii
Pyricularia oryzae
Paralinhomoeus sp. GSCO2_6
Callorhinchus milii
Kalanchoe fedtschenkoi
Trichoderma virens Gv29-8
Helobdella robusta
Drosophila rhopaloa
Puccinia graminis f. sp. tritici 04KEN156/4
Fusarium oxysporum f. sp. lycopersici 4287
Papio anubis
Myotis lucifugus
Setaria italica
Dicrocoelium dendriticum
Olea europaea subsp. europaea
Gaeumannomyces tritici R3-111a-1
Fusarium pseudograminearum CS3096
Tupaia belangeri
Sitophilus oryzae
Pythium arrhenomanes ATCC 12531
Pocillopora damicornis
Haemaphysalis longicornis
Apis dorsata
Haliotis rubra
Microlaimidae sp. YZB2_3
Strigops habroptila
Stegodyphus dumicola
Protopolystoma xenopodis
Anopheles culicifacies
Dasypus novemcinctus
Maylandia zebra
Mesodorylaimus sp. YZB2_4
Strongyloides venezuelensis
Brugia timori
Gopherus evgoodei
Candidozyma pseudohaemuli
Brassica rapa
Triticum dicoccoides
Glycine soja
Acanthochromis polyacanthus
Pogonomyrmex barbatus
Parascaris univalens
Pristionchus pacificus
Bursaphelenchus okinawaensis
Mastacembelus armatus
Arabidopsis halleri subsp. gemmifera
Podarcis muralis
Amblyteles armatorius
Plectus sambesii
Gallus gallus
Mus caroli
Eucalyptus grandis
Procambarus clarkii
Drosophila gunungcola
Notamacropus eugenii
Anser brachyrhynchus
Zootermopsis nevadensis
Prolemur simus
Echinococcus multilocularis
Amphiprion percula
Octopus sinensis
Drosophila willistoni
Cercocebus atys
Clytia hemisphaerica
Dirofilaria immitis
Aspergillus oryzae RIB40
Rhinopithecus roxellana
Aphanomyces invadans
Poecilia formosa
Drosophila kikkawai
Homo sapiens
Homalodisca vitripennis
Fusarium culmorum CS7071
Aphanomyces astaci
Panagrolaimus superbus
Pelodiscus sinensis
Blumeria hordei DH14
Betta splendens
Daphnia pulicaria
Sander lucioperca
Glossina fuscipes
Anopheles farauti
Asparagus officinalis
Cricetulus griseus
Acanthocheilonema viteae
Candidozyma auris
Penaeus japonicus
Drosophila miranda
Brassica oleracea var. oleracea
Propithecus coquereli
Hyalomma asiaticum
Urocitellus parryii
Aspergillus fumigatus Af293
Giardia lamblia ATCC 50803
Anopheles maculatus
Triticum turgidum subsp. durum
Chara braunii
Cryptotermes secundus
Parascaris equorum
Coffea canephora
Aphelenchoides bicaudatus
Ficus carica
Vulpes vulpes
Anopheles stephensi
Anisakis simplex
Rhipicephalus microplus
Oryza sativa aromatic subgroup
Histoplasma ohiense (nom. inval.)
Hypsibius exemplaris
Verticillium dahliae JR2
Puccinia triticina 1-1 BBBD Race 1
Phascolarctos cinereus
Pecten maximus
Oppia nitens
Esox lucius
Bactrocera neohumeralis
Panagrolaimus sp. PS1159
Dermacentor silvarum
Nippostrongylus brasiliensis
Magnaporthiopsis poae ATCC 64411
Leptobrachium leishanense
Moschus moschiferus
Pomphorhynchus laevis
Uloborus diversus
Cervus hanglu yarkandensis
Ursus americanus
Drosophila pseudoobscura pseudoobscura
Aedes aegypti
Allodiplogaster sudhausi
Amphibalanus amphitrite
Brassica rapa subsp. trilocularis
Rosa chinensis
Aegilops umbellulata
Emiliania huxleyi CCMP1516
Trichoplax adhaerens
Anopheles coluzzii
Olea europaea var. sylvestris
Ciona savignyi
Polistes dominula
Stegastes partitus
Mnemiopsis leidyi
Oryctolagus cuniculus
Taenia saginata
Komagataella phaffii GS115
Corchorus capsularis
Tribolium castaneum
Anopheles merus
Sclerotinia sclerotiorum 1980 UF-70
Stomoxys calcitrans
Kryptolebias marmoratus
Caenorhabditis sinica
Callithrix jacchus
Plasmodium berghei ANKA
Daphnia carinata
Colletotrichum fructicola Nara gc5
Trichinella sp. T6
Caenorhabditis brenneri
Neodiprion lecontei
Panthera leo
Caenorhabditis latens
Cataglyphis hispanica
Choloepus hoffmanni
Labrus bergylta
Plenodomus lingam JN3
Corymbia citriodora subsp. variegata
Epsilonema sp. ZAB3_2
Nilaparvata lugens
Sipha flava
Papaver somniferum
Sparus aurata
Oryza brachyantha
Procavia capensis
Pristionchus fissidentatus
Drosophila melanogaster
Monodelphis domestica
Ipomoea triloba
Patella pellucida
Pygocentrus nattereri
Meloidogyne hapla
Triticum urartu
Ornithorhynchus anatinus
Toxoplasma gondii ME49
Microcebus murinus
Meloidogyne javanica
Aplysia californica
Glycine max
Chinchilla lanigera
Phaeodactylum tricornutum CCAP 1055/1
Penaeus monodon
Drosophila erecta
Sarcophilus harrisii
Caenorhabditis angaria
Gongylonema pulchrum
Polistes canadensis
Pristionchus japonicus
Schistocerca americana
Hymenolepis diminuta
Ochotona princeps
Angiostrongylus costaricensis
Schizosaccharomyces cryophilus OY26
Haemonchus placei
Atta cephalotes
Rhinopithecus bieti
Delphinapterus leucas
Monomorium pharaonis
Amyelois transitella
Candida albicans SC5314
Oryza barthii
Belgica antarctica
Mus musculus
Taeniopygia guttata
Trichoderma reesei QM6a
Magallana gigas
Balaenoptera musculus
Aotus nancymaae
Mesorhabditis belari
Diaphorina citri
Lates calcarifer
Nothobranchius furzeri
Drosophila subobscura
Daphnia pulex
Hymenolepis microstoma
Pistacia vera
Oryza punctata
Cyanidioschyzon merolae strain 10D
Drosophila suzukii
Mandrillus leucophaeus
Drosophila ananassae
Trichinella britovi
Bombus impatiens
Colletotrichum graminicola M1.001
Echinochloa crus-galli
Steinernema monticolum
Anopheles albimanus
Anabas testudineus
Trileptium ribeirensis
Colletotrichum orbiculare MAFF 240422
Trifolium pratense
Capra hircus
Capitella teleta
Oscheius tipulae
Diploscapter coronatus
Loxodonta africana
Crassostrea virginica
Panthera tigris altaica
Trichuris trichiura
Xiphophorus maculatus
Hofstenia miamia
Octodon degus
Schistosoma mansoni
Schistocerca cancellata
Zerene cesonia
Megaselia scalaris
Venturia canescens
Meleagris gallopavo
Eragrostis curvula
Camelus dromedarius
Drosophila subpulchrella
Bactrocera tryoni
Bunonema sp. RGD898
Schistosoma guineensis
Monodon monoceros
Actinidia chinensis var. chinensis
Megachile rotundata
Rhipicephalus sanguineus
Caenorhabditis sulstoni
Candida tropicalis MYA-3404
Citrus x clementina
Orchesella cincta
Mus spicilegus
Limulus polyphemus
Limnoperna fortunei
Leguminivora glycinivorella
Sphenodon punctatus
Folsomia candida
Drosophila santomea
Cucumis sativus
Colletotrichum higginsianum
Strigamia maritima
Scleropages formosus
Neodiprion pinetum
Culex quinquefasciatus
Chrysemys picta bellii
Asterias rubens
Oryza meridionalis
Ceratitis capitata
Pongo abelii
Neurospora crassa OR74A
Orussus abietinus
Drosophila mauritiana
Ptycholaimellus sp. GST1_10
Schistosoma spindalis
Strongyloides stercoralis
Drosophila teissieri
Trichobilharzia szidati
Enterobius vermicularis
Neolamprologus brichardi
Setaria digitata
Bombus vancouverensis nearcticus
Trichinella zimbabwensis
Cucumis melo
Apis florea
Hydractinia symbiolongicarpus
Thelohanellus kitauei
Schistocephalus solidus
Pseudonaja textilis
Pan paniscus
Chlorocebus sabaeus
Fundulus heteroclitus
Phytophthora nicotianae P1569
Branchiostoma lanceolatum
Mesocestoides corti
Pyrenophora tritici-repentis Pt-1C-BFP
Peromyscus maniculatus bairdii
Dufourea novaeangliae
Mesorhabditis spiculigera
Yarrowia lipolytica CLIB122
Fasciola gigantica
Vigna angularis
Trichinella papuae
Soboliphyme baturini
Mya arenaria
Cotesia glomerata
Aegilops tauschii subsp. strangulata
Linepithema humile
Seriola lalandi dorsalis
Homarus americanus
Schizosaccharomyces pombe 972h-
Amphilophus citrinellus
Oryzias javanicus
Dermacentor andersoni
Pisum sativum
Astatotilapia calliptera
Glossina austeni
Gorilla gorilla gorilla
Hydatigera taeniaeformis
Anopheles minimus
Fraxinus excelsior
Caenorhabditis japonica
Cylicostephanus goldi
Polistes fuscatus
Steinernema scapterisci
Anopheles darlingi
Helicoverpa armigera
Caenorhabditis becei
Penaeus chinensis
Pundamilia nyererei
Drosophila obscura
Puccinia graminis f. sp. tritici CRL 75-36-700-3
Latimeria chalumnae
Anopheles epiroticus
Phlebotomus perniciosus
Parasteatoda tepidariorum
Culicoides sonorensis
Fusarium vanettenii 77-13-4
Chlamydomonas reinhardtii
Homarus gammarus
Echinococcus canadensis
Taenia solium
Chenopodium quinoa
Oryza nivara
Patella vulgata
Parelaphostrongylus tenuis
Koerneria luziae
Mus pahari
Tuber melanosporum Mel28
Daphnia magna
Bos taurus
Pristionchus exspectatus
Bigelowiella natans CCMP2755
Eufriesea mexicana
Ostreococcus lucimarinus CCE9901
Copidosoma floridanum
Tigriopus californicus
Echinococcus oligarthrus
Schistocerca piceifrons
Eurytemora affinis
Triticum spelta
Echinops telfairi
Trissonchulus latispiculum
Aspergillus niger
Pythium aphanidermatum DAOM BR444
Onthophagus taurus
Ancistrocerus nigricornis
Bombyx mori
Oncorhynchus kisutch
Fasciolopsis buskii
Eptatretus burgeri
Drosophila bipectinata
Acromyrmex echinatior
Onchocerca volvulus
Vigna unguiculata
Rattus norvegicus
Romanomermis culicivorax
Caenorhabditis bovis
Sporisorium reilianum SRZ2

genes_colname

Name of the column that holds gene IDs (Ensembl or symbols or mixed).

Type : string

padj_threshold

Optional

FDR threshold used to filter g:Profiler results.

Type : float

Default value : 0.05

abs_log2fc

Optional

Absolute |log2FC| (used only upstream; not by g:Profiler).

Type : float

topn_plot

Optional

Top-N terms for static barplots.

Type : float

Default value : 20

sources_list

Optional

Comma-separated sources for g:Profiler.

Type : string

Default value : GO:BP,GO:MF,GO:CC,KEGG

grid_genes_per_page

Optional

Genes per page in the interactive grid.

Type : float

Default value : 25

Input

Output

Configuration

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