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Publication date

Mar 9, 2022

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RefSeqDB Local BLAST

TASK

16 times

50 %

1 day, 5 hours

Typing name : TASK.gws_omix.LocalBlast

Brick : gws_omix

Run local BLAST on each sequence of a FASTA using RefSeq DB

Base class

Input

FASTA input

BLAST DB folder

Output

BLAST output tables

A set of resources

Configuration

sequence_type

Type : string

Allowed values :

nucl
prot

blast_program

Type : string

Allowed values :

blastn
blastp
blastx
tblastn

evalue

Optional

Type : float

Default value : 0.00001

max_target_seqs

Optional

Type : int

Default value : 5

threads

Optional

Type : int

Default value : 8

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