Menu

Getting Started

Use Cases

Technical documentations

Contributor(s)

Publication date

Mar 9, 2022

Confidentiality

Public

Reactions

0

Share

RefSeqDB Local BLAST

TASK

Typing name : TASK.gws_omix.LocalBlast

Brick : gws_omix

Run local BLAST on each sequence of a FASTA using RefSeq DB

Base class

Input

FASTA input

BLAST DB folder

Output

BLAST output tables

A set of resources

Configuration

sequence_type

Type : string

Allowed values :

nucl
prot

blast_program

Type : string

Allowed values :

blastn
blastp
blastx
tblastn

evalue

Optional

Type : float

Default value : 0.00001

max_target_seqs

Optional

Type : int

Default value : 5

threads

Optional

Type : int

Default value : 8

Technical bricks to reuse or customize

Have you developed a brick?

Share it to accelerate projects for the entire community.