RefSeqDB Local BLAST

Typing name : TASK.gws_omix.LocalBlast

Brick : gws_omix

Run local BLAST on each sequence of a FASTA using RefSeq DB

Base class

FASTA input

BLAST DB folder

BLAST output tables

A set of resources

sequence_type

Type : string

Allowed values : nucl prot

blast_program

Type : string

Allowed values : blastn blastp blastx tblastn

evalue

Optional

Type : float

Default value : 0.00001

max_target_seqs

Optional

Type : int

Default value : 5

threads

Optional

Type : int

Default value : 8

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