Publication dateMar 9, 2022
Confidentiality public Public
timer
1 minute, 6 seconds
Typing name : TASK.gws_omix.Hisat2_Index Brick : gws_omix Build genome index for HISAT2
This task builds a HISAT2 genome index from a reference FASTA.
Provide a genome_file (FASTA). Configure threads (CPU cores, default 4).
The task runs hisat2-build and writes the index files to working_dir.
It returns an output folder pointing to that directory. Use this index later for read alignment with HISAT2.
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Input
FASTA Genome
Reference genome in FASTA format
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Output
HISAT2 Index
Generated HISAT2 index
settings
Configuration
Number of threads
Type : intDefault value : 4Technical bricks to reuse or customize Have you developed a brick?
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