Adapter & quality trimming with fastp
Input
FASTQ folder
Folder containing raw FASTQ(.gz); relative paths in metadata start from here
Metadata (TSV)
Table with absolute-filepath (SE) or forward- & reverse-absolute-filepath (PE)
Output
Trimmed FASTQ
Folder with *_trimmed*.fastq.gz files
Configuration
threads
int4Forward_separator
string1Reverse_separator
string25_prime_hard_trimming_read_size
int