gws_omix

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Version

FastQC

TASK
Typing name :  TASK.gws_omix.FastQC Brick :  gws_omix

Check read quality with FastQC

Base class

Input

FASTQ folder
Folder containing *.fastq(.gz) files ; relative paths in metadata are resolved from here
Metadata (TSV)
TSV listing sample-ids and file path(s)

Output

Quality reports
Folder with FastQC HTML & ZIP files

Configuration

threads

Optional

Number of CPU threads for FastQC

Type : intDefault value : 8