FastQC

TASK

Typing name : TASK.gws_omix.FastQC

Brick : gws_omix

Check read quality with FastQC

Base class

FASTQ folder

Folder containing *.fastq(.gz) files ; relative paths in metadata are resolved from here

Metadata (TSV)

TSV listing sample-ids and file path(s)

Quality reports

Folder with FastQC HTML & ZIP files

threads

Optional

Number of CPU threads for FastQC

Type : int

Default value : 8

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