Diamond
Accelerated BLAST compatible local sequence aligner.
DIAMOND, an evolutionary leap in bioinformatics, presenting an enhanced version that transcends the boundaries of its predecessors while matching the sensitivity of the gold standard BLASTP. It uses UniProtKB/Swiss-Prot database.
Configuration options
* input_type_value: Alignement type. Prot against Prot database (i.e blastp) or Translated Nucl against prot database (i.e blastx). Respectivly, options = prot, nuc. [Default: nuc] ".
* evalue_value: E-value to exclude results. Default = 0.00001 (i.e 1e-5).
* num_threads: Multi threading options: number of threads to use (min=1, max=7). [Default = 1].
* `query_cover_value: Coverage (see blast option -qcov_hsp_perc) minimum percentage threshold to exclude results (min= 1, max= 100). [Default = 70]
Input
Output
Configuration
input_type_value
Type of alignement to perform : Prot against Prot database (i.e blastp) or Translated Nucl against prot database (i.e blastx). [Respectivly, options : prot, nuc ]. Default = nuc
stringnuc prot nucevalue_value
E-value : Default = 0.00001 (i.e 1e-5)
float0.00001num_threads
Number of threads
int1query_cover_value
Report only alignments above the given percentage of query cover (min= 1, max= 100). [Default = 70]
int70