Diamond - gws_omix

Typing name : TASK.gws_omix.Diamond

Brick : gws_omix

Accelerated BLAST compatible local sequence aligner.

DIAMOND, an evolutionary leap in bioinformatics, presenting an enhanced version that transcends the boundaries of its predecessors while matching the sensitivity of the gold standard BLASTP. It uses UniProtKB/Swiss-Prot database.

Configuration options * input_type_value: Alignement type. Prot against Prot database (i.e blastp) or Translated Nucl against prot database (i.e blastx). Respectivly, options = prot, nuc. [Default: nuc] ". * evalue_value: E-value to exclude results. Default = 0.00001 (i.e 1e-5). * num_threads: Multi threading options: number of threads to use (min=1, max=7). [Default = 1]. * `query_cover_value: Coverage (see blast option -qcov_hsp_perc) minimum percentage threshold to exclude results (min= 1, max= 100). [Default = 70]

Input

Fasta File

Fasta Input File

File

Output

Blast results

This table resumes Diamond results

Table

Configuration

input_type_value

Optional

Type of alignement to perform : Prot against Prot database (i.e blastp) or Translated Nucl against prot database (i.e blastx). [Respectivly, options : prot, nuc ]. Default = nuc

Type : string

Default value : nuc

evalue_value

Optional

E-value : Default = 0.00001 (i.e 1e-5)

Type : float

Default value : 0.00001

num_threads

Optional

Number of threads

Type : int

Default value : 1

query_cover_value

Optional

Report only alignments above the given percentage of query cover (min= 1, max= 100). [Default = 70]

Type : int

Default value : 70