Publication dateMar 9, 2022
Confidentiality public Public
Typing name : TASK.gws_omix.Diamond Brick : gws_omix Accelerated BLAST compatible local sequence aligner.
DIAMOND, an evolutionary leap in bioinformatics, presenting an enhanced version that transcends the boundaries of its predecessors while matching the sensitivity of the gold standard BLASTP.
It uses UniProtKB/Swiss-Prot database.
Configuration options
* input_type_value: Alignement type. Prot against Prot database (i.e blastp) or Translated Nucl against prot database (i.e blastx). Respectivly, options = prot, nuc. [Default: nuc] ".
* evalue_value: E-value to exclude results. Default = 0.00001 (i.e 1e-5).
* num_threads: Multi threading options: number of threads to use (min=1, max=7). [Default = 1].
* `query_cover_value: Coverage (see blast option -qcov_hsp_perc) minimum percentage threshold to exclude results (min= 1, max= 100). [Default = 70]
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Input
Fasta File
Fasta Input File
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Output
Blast results
This table resumes Diamond results
settings
Configuration
input_type_value
Optional
Type of alignement to perform : Prot against Prot database (i.e blastp) or Translated Nucl against prot database (i.e blastx). [Respectivly, options : prot, nuc ]. Default = nuc
Type : stringAllowed values : nuc prot Default value : nucE-value : Default = 0.00001 (i.e 1e-5)
Type : floatDefault value : 0.00001Number of threads
Type : intDefault value : 1 query_cover_value
Optional
Report only alignments above the given percentage of query cover (min= 1, max= 100). [Default = 70]
Type : intDefault value : 70Technical bricks to reuse or customize
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