Introduction Base omix env task Base r env task Blast ec list extractor Blast to EC-number Annotator Deep ec Deep ec env task Deep ec list extractor DESeq2 pairwise differential analysis ECListMerger Feature Counts Genome by mapping assembly pipeline Gmap align gtf Gmap index GSEA_GO_enrichment HTSeqCount Inter pro scan env task Py gsea env task Salmon index Salmon quant mapping Star index Star mapping genome reads Star mapping transcriptome reads Subread env task Top go2 env task TopGO2_GO_enrichment Trim fq env task TrimGalore cleaning
Technical Documentation
Resources
Tasks
DESeq2 pairwise differential analysis
Compute differential analysis using DESeq2 R package (pairwise comparison)
DESeq2DifferentialAnalysis class.
Input
Output
Configuration
metadata_column
Column on which the differential analysis will be performed
stringoutput_file_names
Choose the output file names (e.g. output_file --> output-file.XXX.txt, ...)
stringDESeq2summary_threshold
Choose the threshold used to filter adjusted p-value to generate summary file
float0.05