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DESeq2 pairwise differential analysis

TASK
Typing name :  TASK.gws_omix.DESeq2DifferentialAnalysis Brick :  gws_omix v Parent : 

Compute differential analysis using DESeq2 R package (pairwise comparison)

DESeq2DifferentialAnalysis class.

Input

Output

Configuration

metadata_column

Optional

Column on which the differential analysis will be performed

Type : string

output_file_names

Optional

Choose the output file names (e.g. output_file --> output-file.XXX.txt, ...)

Type : stringDefault value : DESeq2

summary_threshold

Optional

Choose the threshold used to filter adjusted p-value to generate summary file

Type : floatDefault value : 0.05