Publication dateMar 9, 2022
Confidentiality public Public
Blast to EC-number Annotator
TASK
Typing name : TASK.gws_omix.BlastEC Brick : gws_omix BlastEC is an homology based EC-number (Enzyme id) annotator which used Blastp/x and UniProtKB-db.
BlastEC class.
Represents a process that wraps NCBI blast program. This version !!! ALLOWED !!! to get EC numbers for digital twins reconstruction.
Configuration options
* taxonomy: Specify the tax group to select the dedicated database.
* alignement_type: Alignement type. Prot against Prot database (i.e blastp) or Translated Nucl against prot database (i.e blastx). Respectivly, options = PP, TNP. [Default: PP] ".
* num_alignments: Number of database sequences to show alignments for [Default: 10], * evalue: E-value to exclude results. Default = 0.00001 (i.e 1e-5). * threads: Multi threading options: number of threads to use (min=1, max=7). [Default = 1]. * idt: Similarity/identity minimum percentage threshold to exclude results (min= 1, max= 100). [Default = 70]. * cov`: Coverage (see blast option -qcov_hsp_perc) minimum percentage threshold to exclude results (min= 1, max= 100). [Default = 70].
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Input
Fasta File
Fasta Input File
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Output
Blast results
Blast results
settings
Configuration
Specify the tax group to select the dedicated database
Type : stringAllowed values : fungi Type of alignement to perform : Prot against Prot database (i.e blastp) or Translated Nucl against prot database (i.e blastx). [Respectivly, options : PP, TNP ]. Default = PP
Type : stringAllowed values : PP TNP Default value : PPNumber of database sequences to show alignments for [Default: 10]
Type : intDefault value : 10E-value : Default = 0.00001 (i.e 1e-5)
Type : floatDefault value : 0.00001Number of threads
Type : intDefault value : 1Similarity/identity minimum percentage threshold to exclude results. [Default = 70]
Type : intDefault value : 70Coverage (see blast option -qcov_hsp_perc) minimum percentage threshold to exclude results [Default = 70]
Type : intDefault value : 70Technical bricks to reuse or customize
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