Blast to EC-number Annotator
BlastEC is an homology based EC-number (Enzyme id) annotator which used Blastp/x and UniProtKB-db.
BlastEC class.
Represents a process that wraps NCBI blast program. This version !!! ALLOWED !!! to get EC numbers for digital twins reconstruction.
Configuration options
* taxonomy: Specify the tax group to select the dedicated database.
* alignement_type: Alignement type. Prot against Prot database (i.e blastp) or Translated Nucl against prot database (i.e blastx). Respectivly, options = PP, TNP. [Default: PP] ".
* num_alignments: Number of database sequences to show alignments for [Default: 10], * evalue: E-value to exclude results. Default = 0.00001 (i.e 1e-5). * threads: Multi threading options: number of threads to use (min=1, max=7). [Default = 1]. * idt: Similarity/identity minimum percentage threshold to exclude results (min= 1, max= 100). [Default = 70]. * cov`: Coverage (see blast option -qcov_hsp_perc) minimum percentage threshold to exclude results (min= 1, max= 100). [Default = 70].
Input
Output
Configuration
taxonomy
Specify the tax group to select the dedicated database
stringfungi alignment_type
Type of alignement to perform : Prot against Prot database (i.e blastp) or Translated Nucl against prot database (i.e blastx). [Respectivly, options : PP, TNP ]. Default = PP
stringPP TNP PPnum_alignments
Number of database sequences to show alignments for [Default: 10]
int10e_value
E-value : Default = 0.00001 (i.e 1e-5)
float0.00001threads
Number of threads
int1idt
Similarity/identity minimum percentage threshold to exclude results. [Default = 70]
int70cov
Coverage (see blast option -qcov_hsp_perc) minimum percentage threshold to exclude results [Default = 70]
int70