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Context builder Context exporter Context importer Convert Model Annotation Draft recon FBA Flux Table Analysis FVA Gap filler Isolate finder Kegg Visualisation KOA KOA result extractor Load BiGG Models Metabolites file transformation Network exporter Network importer Network merger Orphan remover Reaction adder Reaction remover Reactions file transformation Transformer Biomass Reaction Transformer EC Number Table Transformer Entity ID Table Transformer Flux Table Transformer Medium Transformer Phenotype Table Transporter adder Twin annotator Twin builder Twin exporter Twin flattener Twin importer Twin reducer XML/Matlab to JSON Version

Reactions file transformation

TASK
Typing name :  TASK.gws_gena.Transform_reactions_file Brick :  gws_gena

Transformation of the Bigg Models database reactions file

Task to create database with reactions from BiGG. This task is used in the conversion annotation task.

Output

Output folder
transformed reactions file
Folder

Configuration

URL

Optional

URL of the reactions.txt file to download

Type : stringDefault value : http://bigg.ucsd.edu/static/namespace/bigg_models_reactions.txt