Introduction Biomass reaction table importer Context builder Context exporter Context importer Convert Model Annotation Draft recon Draft recon EC number table importer Entity ID table importer FBA Flux Table Analysis Flux table importer FVA Gap filler Isolate finder KOA KOA result extractor Medium table importer Network exporter Network importer Network merger Orphan remover Phenotype table importer Reaction adder Reaction remover Smart json modificator (cobra) Transporter adder Twin annotator Twin builder Twin exporter Twin flattener Twin importer Twin reducer XML/Matlab to JSON
Technical Documentation
Resources
Tasks
Protocols
Isolate finder
Finds genes/reactions that are isolates, i.e. topologically non-connected to the cell growth
IsolateFinder.
Finds wether genes/reactions are isolates, i.e. topologically non-connected to the cell growth
Input
Network
Metabolic network
Output
Isolate finder result
Result containing the lists of compounds and reactions that are not connected to cell growth