TableRowAnnotatorHelper
Annotate the rows of a sample_table using information from a metadata_table.
- all the row values of the reference column of the
sample_tableare matched against theidsof themetadata_table. - if an
idmatches against a reference value of thesample_table, the corresponding row of thesample_tableis taggeg with the metadata given by theid.
Functions
annotate_columns @classmethod
Annotate the columns of a table using information from a metadata_table.
All the column values of the reference row of the table are matched against the ids of the metadata_table.
If an id matches against a reference value of the table, the corresponding column of the table is tagged with the metadata given by the id.
table :
Table the table to annotate
metadata_table :
Table the metadata table
table_ref_row :
str ref row of the table to match against the metadata table
If None or empty, the first row is used
metadata_table_ref_column :
str ref column of the metadata table to match against the table
If None or empty, the first column is used
use_table_column_names_as_ref :
bool - False use_metadata_row_names_as_ref :
bool - False Return type :
Table annotate_rows @classmethod
Annotate the rows of a table using information from a metadata_table.
All the row values of the reference column of the table are matched against the ids of the metadata_table.
If an id matches against a reference value of the table, the corresponding row of the table is tagged with the metadata given by the id.
table :
Table the table to annotate
metadata_table :
Table the metadata table
table_ref_column :
str ref column of the table to match against the metadata table
If None or empty, the first column is used
metadata_table_ref_column :
str ref column of the metadata table to match against the table
If None or empty, the first column is used
use_table_row_names_as_ref :
bool - False use_metadata_row_names_as_ref :
bool - False Return type :
Table