CondaShellProxy - gws_core

Shell task proxy.

This class is a proxy to Shell commandes. It allow running commands in a shell and get the output and stdout.

Attributes

CONFIG_FILE_NAME: strenv_file_path: strenv_hash: strenv_name: strworking_dir: str

Functions

__init__

summary

env_file_path : Union

path to the env file. This file must contained dependencies for the virtual env and will be used to create the env. If the env file has changed, the env will be recreated and previous env will be deleted.

env_name : str

Name of the environment. This name will be shown in the env list. If not provided, a name is generated

working_dir : str

working directory for the shell (all command will be executed from this dir). If not provided, an new temp directory is created. defaults to None

message_dispatcher : MessageDispatcher

if provided, the output of the command will be redirected to the dispatcher. Can be useful to log command outputs in task's logs. defaults to None

attach_observer

Attach a custom observer to the shell proxy. The logs of the proxy will be dispatch to the observer

observer : MessageObserver

attach_progress_bar

Attach a progress_bar to the shell proxy. The logs of the proxy will be dispatch to the progress_bar logs

progress_bar : ProgressBar

build_os_env

Creates the OS environment variables that are passed to the shell command

Return type : dict

check_output

Run a command in a shell and return the output. There logs of the command are ignored.

cmd : Union

command to run

env : dict

environment variables to pass to the shell

shell_mode : bool - False

if True, the command is run in a shell

text : bool - True

if True, the output is returned as a string

Return type : Any

clean_working_dir

create_env_dir

Create the env dir.

Return type : Path

dispatch_waiting_messages

env_is_installed

Returns True if the virtual env is installed. False otherwise

Return type : bool

format_command

Format the user command. If the command is a list, must return a list.

user_cmd : Union

Return type : Union

get_config_file_path

Returns the path of the config file used to create the env

Return type : str

get_env_dir_path

Returns the absolute path for the env dir base on a dir name. All env are in the global env dir.

Return type : str

get_message_dispatcher

Get the message dispatcher

Return type : MessageDispatcher

get_venv_dir_path

Return type : str

install_env

Install the virtual env. Return True if the env was installed, False if it was already installed, or an error occured.

Return type : bool

log_error_message

Log an error message using the dispatcher

message : str

log_info_message

Log an info message using the dispatcher

message : str

log_warning_message

Log a warining message using the dispatcher

message : str

read_env_file

Read the env file and return its content.

Return type : str

run

Run a command in a shell. The logs of the command will be dispatched to the message dispatcher during the execution.

cmd : Union

command to run

env : dict

environment variables to pass to the shell

shell_mode : bool - False

if True, the command is run in a shell

dispatch_stdout : bool - False

if True, the stdout of the command is dispatched to the message dispatcher. ⚠️ Warning ⚠️ Do not set to True if the command generates a lot of logs, because logs are stored in database

dispatch_stderr : bool - True

if True, the stderr of the command is dispatched to the message dispatcher. ⚠️ Warning ⚠️ Do not set to True if the command generates a lot of logs, because logs are stored in database

Return type : int

run_in_new_thread

Run a command in a shell without blocking the thread. There logs of the command are ignored.

cmd : Union

command to run

env : dict

environment variables to pass to the shell

shell_mode : bool - False

if True, the command is run in a shell

Return type : SysProc

to_dto

Return type : ShellProxyDTO

uninstall_env

Uninstall the virtual env. Return true if the env was uninstalled, False if it was already uninstalled or an error occured.

Return type : bool

classname @classmethod

Returns the name of the class

slugify : bool - False

True to slugify the class name if True

snakefy : bool - False

True to snakefy the class name if True

replace_uppercase : bool - False

Replace upper cases by "-" if True

Return type : str

folder_is_env @classmethod

return true if the folder is a valid env folder

folder_path : str

Return type : bool

from_env_str @classmethod

Create the virtual environment from a string containing the environment definition.

The env dir name is generated from an hash of the env_str. So if the env_str is the same, the env dir name will be the same.

env_str : str

message_dispatcher : MessageDispatcher

Return type : BaseEnvShell

full_classname @classmethod

Returns the full name of the class

slugify : bool - False

Slugify the returned class name if True

snakefy : bool - False

Snakefy the returned class name if True

Return type : str

get_creation_info @classmethod

Returns the json info file content

folder_path : str

Return type : VEnvCreationInfo

get_env_type @classmethod

Returns the type of the env

Return type : Literal

get_human_name @classmethod

Get the human name of the resource

Return type : str

get_short_description @classmethod

Get the short description of the resource

Return type : str

get_style @classmethod

Get the style of the resource

Return type : TypingStyle

get_typing_name @classmethod

Get the typing name of the resource

Return type : str

hash_env_str @classmethod

Create a hash from the env_str to generate a unique env dir name.

env_str : str

Return type : str

inheritors @classmethod

Get all the classes that inherit this class

Return type : List