Db creator
Base class
Configuration
go_file
string
./go/go.obo
sbo_file
string
./sbo/sbo.obo
eco_file
string
./eco/eco.obo
chebi_file
string
./chebi/obo/chebi.obo
bto_file
string
./brenda/bto/bto.json
pwo_file
string
./pwo/pwo.obo
brenda_file
string
./brenda/brenda/brenda_download.txt
bkms_file
string
./bkms/Reactions_BKMS.csv
protein_file
string
./uniprot/uniprot_sprot.fasta
ncbi_node_file
string
./ncbi/taxdump/nodes.dmp
ncbi_name_file
string
./ncbi/taxdump/names.dmp
ncbi_division_file
string
./ncbi/taxdump/division.dmp
ncbi_citation_file
string
./ncbi/taxdump/citations.dmp
expasy_enzclass_file
string
./expasy/enzclass.txt
rhea_reaction_file
string
./rhea/rhea-reactions.txt
rhea_direction_file
string
./rhea/tsv/rhea-directions.tsv
rhea2ecocyc_file
string
./rhea/tsv/rhea2ecocyc.tsv
rhea2metacyc_file
string
./rhea/tsv/rhea2metacyc.tsv
rhea2macie_file
string
./rhea/tsv/rhea2macie.tsv
rhea2kegg_reaction_file
string
./rhea/tsv/rhea2kegg_reaction.tsv
rhea2ec_file
string
./rhea/tsv/rhea2ec.tsv
rhea2reactome_file
string
./rhea/tsv/rhea2reactome.tsv
reactome_pathways_file
string
./reactome/ReactomePathways.txt
reactome_pathway_relations_file
string
./reactome/ReactomePathwaysRelation.txt
reactome_chebi_pathways_file
string
./reactome/ChEBI2Reactome.txt