Stories
Live tasks
Bricks
Login
Back to bricks list
Introduction Version

Twin reducer

TASK
Typing name :  TASK.gws_gena.TwinReducer Brick :  gws_gena

Perform model reduction based on a digital twin

Class digital twin reduction Provide a twin in input and set the parameters to get a table of elementary flux modes and a reduction table.

Input

Digital twin
The digital twin to reduce
Twin
Flat twin

Output

EFM table
The table of elementary flux modes
Twin EFM table
Reduction table
The reduction table
Twin reduction table

Configuration

ignore_cofactors

Optional

Set True to ignore cofactors, False otherwise.

Type : bool

reversible_reactions

Optional

The list of reversible reactions (EC numbers, Reaction IDs). By default all the reactions are considered irreversible.

Type : list