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Introduction Version

Transformer Medium

TASK
Typing name :  TASK.gws_gena.TransformerMediumTable Brick :  gws_gena v

Task to transform table into Medium table

TransformerMediumTable class

Allows to transform a Table with the right columns names to create a Medium Table. The Medium Table is a table representing a culture medium composition.

  • The first column is the compound name (offical or user-defined name) [required]
  • The next column is the list chebi ids [required]

For example:

entity chebi_id
2-oxoglutarate CHEBI:16810
glutamine CHEBI:18050

Input

Initial table
2d excel like table

Output

Table
2d excel like table

Configuration

entity_column

Optional

The name of the entity column

Type : stringDefault value : entity

chebi_id_column

Optional

The name of the column of ChEBI ID

Type : stringDefault value : chebi_id