Transformer Medium
Task to transform table into Medium table
TransformerMediumTable class
Allows to transform a Table with the right columns names to create a Medium Table.
The Medium Table is a table representing a culture medium composition.
- The first column is the compound name (offical or user-defined name)
[required] - The next column is the list chebi ids
[required]
For example:
| entity | chebi_id |
|---|---|
| 2-oxoglutarate | CHEBI:16810 |
| glutamine | CHEBI:18050 |
Input
Initial table
2d excel like table
Output
Table
2d excel like table
Configuration
entity_column
The name of the entity column
stringentitychebi_id_column
The name of the column of ChEBI ID
stringchebi_id