Transformer Medium - gws_gena

Typing name : TASK.gws_gena.TransformerMediumTable

Brick : gws_gena

Task to transform table into Medium table

TransformerMediumTable class

Allows to transform a Table with the right columns names to create a Medium Table. The Medium Table is a table representing a culture medium composition.

The first column is the compound name (offical or user-defined name) [required]
The next column is the list chebi ids [required]

For example:

entity	chebi_id
2-oxoglutarate	CHEBI:16810
glutamine	CHEBI:18050

Input

Initial table

2d excel like table

Table

Output

Table

2d excel like table

Table

Configuration

entity_column

Optional

The name of the entity column

Type : string

Default value : entity

chebi_id_column

Optional

The name of the column of ChEBI ID

Type : string

Default value : chebi_id