Transformer Flux Table

TransformerFluxTable class

Allows to transform a Table with the right columns names to create a Flux Table. The Flux Table is a generic table of entity IDs (CheBI IDs, Rhea IDs, EC Numbers, User-defined IDs, ...). It's a table of experimentally measured (or user-defined) metabolic fluxes

The header of you Table can be the following: "reaction_id,target,lower_bound,upper_bound,confidence_score"

• The first column is the list of reaction ids and/or ec numbers [required]. They uniquely identify each reaction of a network.
• The next columns are:
  • target: the value of the flux measured experimentally (e.g. mol/gDW/h) [required]
  • upper_bound: the upper bound of the flux (e.g. mol/gDW/h) [required]
  • lower_bound: the lower bound of the flux (e.g. mol/gDW/h) [required]
  • confidence_score: the confidence score of the flux [required]

For example:

This Task manages multiple simulations. So if you have different values of target,lower_bound,upper_bound; set them as a list like this: reaction_id,target,lower_bound,upper_bound,confidence_score reaction1,"[0.04, 0.045, 0.035]","[0.01, 0.008, -0.02]","[0.03, -0.003, 0.001]","[1, 1, 1]"