TransformerFluxTable class
Allows to transform a Table with the right columns names to create a Flux Table.
The Flux Table is a generic table of entity IDs (CheBI IDs, Rhea IDs, EC Numbers, User-defined IDs, ...).
It's a table of experimentally measured (or user-defined) metabolic fluxes
The header of you Table can be the following: "reaction_id,target,lower_bound,upper_bound,confidence_score"
- The first column is the list of
reaction ids and/or ec numbers [required]. They uniquely identify each reaction of a network.
- The next columns are:
- target: the value of the flux measured experimentally (e.g.
mol/gDW/h) [required]
- upper_bound: the upper bound of the flux (e.g.
mol/gDW/h) [required]
- lower_bound: the lower bound of the flux (e.g.
mol/gDW/h) [required]
- confidence_score: the confidence score of the flux
[required]
For example:
| id |
target |
lower_bound |
lower_bound |
confidence_score |
| RHEA_62620_1_11_1_24 |
0.234 |
0 |
1000 |
1.0 |
| 6.3.1.2 |
-1.234 |
-5 |
0 |
1.0 |
This Task manages multiple simulations. So if you have different values of target,lower_bound,upper_bound; set them as a list like this:
reaction_id,target,lower_bound,upper_bound,confidence_score
reaction1,"[0.04, 0.045, 0.035]","[0.01, 0.008, -0.02]","[0.03, -0.003, 0.001]","[1, 1, 1]"
