Introduction Biomass reaction table importer Context builder Context exporter Context importer Convert Model Annotation Draft recon Draft recon EC number table importer Entity ID table importer FBA Flux Table Analysis Flux table importer FVA Gap filler Isolate finder KOA KOA result extractor Medium table importer Network exporter Network importer Network merger Orphan remover Phenotype table importer Reaction adder Reaction remover Smart json modificator (cobra) Transporter adder Twin annotator Twin builder Twin exporter Twin flattener Twin importer Twin reducer XML/Matlab to JSON
Technical Documentation
Resources
Tasks
Protocols
Reaction adder
Add a list of reactions to a network
ReactionAdder class.
Add a list of reactions to an existing network
Input
Network
Network to complete
Table of EC numbers or IDs
The table of reactions to add
Output
Network
The network after completion
Configuration
tax_id
The NCBI taxonomy id
stringtax_search_method
If 'bottom_up', the algorithm will to traverse the taxonomy tree to search in the higher taxonomy levels until a reaction is found. If 'none', the algorithm will only search at the given taxonomy level given by `tax_id`
stringbottom_up