Reaction adder

Identity

Typing name : TASK.gws_gena.ReactionAdder

Brick : gws_gena

Short description

Add a list of reactions to a network

ReactionAdder class.

Add a list of reactions to an existing network

Input

Network

Network to complete

Network

Table of EC numbers or IDs

The table of reactions to add

Table

Output

Network

The network after completion

Network

Configuration

tax_id

Optional

The NCBI taxonomy id

Type : string

tax_search_method

Optional

If 'bottom_up', the algorithm will to traverse the taxonomy tree to search in the higher taxonomy levels until a reaction is found. If 'none', the algorithm will only search at the given taxonomy level given by `tax_id`

Type : string

Default value : bottom_up

Identity

Short description

Input

Output

Configuration

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