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Introduction Version

Reaction adder

TASK
Typing name :  TASK.gws_gena.ReactionAdder Brick :  gws_gena v

Add a list of reactions to a network

ReactionAdder class.

Add a list of reactions to an existing network

Input

Network
Network to complete
Table of EC numbers or IDs
The table of reactions to add

Output

Network
The network after completion

Configuration

tax_id

Optional

The NCBI taxonomy id

Type : string

tax_search_method

Optional

If 'bottom_up', the algorithm will to traverse the taxonomy tree to search in the higher taxonomy levels until a reaction is found. If 'none', the algorithm will only search at the given taxonomy level given by `tax_id`

Type : stringDefault value : bottom_up