Publication dateMar 9, 2022
Confidentiality public Public
Typing name : TASK.gws_gena.PlotFluxTableAnalysis Brick : gws_gena This task permits to plot a graph to analyse two fluxes tables from FBA.
Flux Table Analysis class
This task permits to plot a graph to analyse two fluxes tables from FBA.
Based on the log2(Fold change) of these fluxes, tag the fluxes according to whether they are more or less expressed in condition 2 than in condition 1.
The threshold value entered in the parameters helps to discriminate the different groups.
This task takes two fluxes tables and a file containing at least a column with the modified reactions in input.
Gives a scatter plot with coloured points and a table in output.
In the advanced parameters you can specify a column where you can specify whether the modified reaction was up-regulated or down-regulated.
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Input
Table
2d excel like table
Table
2d excel like table
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Output
Plotly resource
Plotly resource
Table
2d excel like table
settings
Configuration
Name of the condition 1
Type : stringName of the condition 2
Type : stringPattern before the reaction id in the flux table
Type : stringName of the column containing the reactions
Type : stringThreshold for the log2(Fold Change)
Type : floatDefault value : 2 log_x
Optional Advanced parameter
True to consider the x axis as logarithmic. False otherwise.
Type : bool log_y
Optional Advanced parameter
True to consider the y axis as logarithmic. False otherwise.
Type : bool column_reaction_tag_modified
Optional Advanced parameter
Name of the column containing the tag of the reaction modified (up or down regulated).
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