Flux Table Analysis - gws_gena

Typing name : TASK.gws_gena.PlotFluxTableAnalysis

Brick : gws_gena

This task permits to plot a graph to analyse two fluxes tables from FBA.

Flux Table Analysis class

This task permits to plot a graph to analyse two fluxes tables from FBA. Based on the log2(Fold change) of these fluxes, tag the fluxes according to whether they are more or less expressed in condition 2 than in condition 1. The threshold value entered in the parameters helps to discriminate the different groups.

This task takes two fluxes tables and a file containing at least a column with the modified reactions in input.

Gives a scatter plot with coloured points and a table in output.

In the advanced parameters you can specify a column where you can specify whether the modified reaction was up-regulated or down-regulated.

Input

Table

2d excel like table

Table

2d excel like table

Table

File

Output

Plotly resource

Table

2d excel like table

Table

Configuration

name_condition1

Name of the condition 1

Type : string

name_condition2

Name of the condition 2

Type : string

pattern

Pattern before the reaction id in the flux table

Type : string

column_reaction_id

Name of the column containing the reactions

Type : string

threshold

Optional

Threshold for the log2(Fold Change)

Type : float

Default value : 2

log_x

Optional

Advanced parameter

True to consider the x axis as logarithmic. False otherwise.

Type : bool

log_y

Optional

Advanced parameter

True to consider the y axis as logarithmic. False otherwise.

Type : bool

column_reaction_tag_modified

Optional

Advanced parameter

Name of the column containing the tag of the reaction modified (up or down regulated).

Type : string