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Introduction Version

Flux Table Analysis

TASK
Typing name :  TASK.gws_gena.PlotFluxTableAnalysis Brick :  gws_gena

This task permits to plot a graph to analyse two fluxes tables from FBA.

Flux Table Analysis class

This task permits to plot a graph to analyse two fluxes tables from FBA. Based on the log2(Fold change) of these fluxes, tag the fluxes according to whether they are more or less expressed in condition 2 than in condition 1. The threshold value entered in the parameters helps to discriminate the different groups.

This task takes two fluxes tables and a file containing at least a column with the modified reactions in input.

Gives a scatter plot with coloured points and a table in output.

In the advanced parameters you can specify a column where you can specify whether the modified reaction was up-regulated or down-regulated.

Input

Table
2d excel like table
Table
Table
2d excel like table
Table
File
File

Output

Plotly resource
Plotly resource
Plotly resource
Table
2d excel like table
Table

Configuration

name_condition1

Name of the condition 1

Type : string

name_condition2

Name of the condition 2

Type : string

pattern

Pattern before the reaction id in the flux table

Type : string

column_reaction_id

Name of the column containing the reactions

Type : string

threshold

Optional

Threshold for the log2(Fold Change)

Type : floatDefault value : 2

log_x

OptionalAdvanced parameter

True to consider the x axis as logarithmic. False otherwise.

Type : bool

log_y

OptionalAdvanced parameter

True to consider the y axis as logarithmic. False otherwise.

Type : bool

column_reaction_tag_modified

OptionalAdvanced parameter

Name of the column containing the tag of the reaction modified (up or down regulated).

Type : string