Introduction Biomass reaction table importer Context builder Context exporter Context importer Convert Model Annotation Draft recon Draft recon EC number table importer Entity ID table importer FBA Flux Table Analysis Flux table importer FVA Gap filler Isolate finder KOA KOA result extractor Medium table importer Network exporter Network importer Network merger Orphan remover Phenotype table importer Reaction adder Reaction remover Smart json modificator (cobra) Transporter adder Twin annotator Twin builder Twin exporter Twin flattener Twin importer Twin reducer XML/Matlab to JSON
Technical Documentation
Resources
Tasks
Protocols
Network importer
Import file to Network
NetworkImporter
Input
File
Output
Network
Metabolic network
Configuration
translate_ids
If possible, translate all (compound and reaction) (recommended)
boolreplace_unknown_compartments
Set default compartment as others
boolskip_orphans
Set True to skip orphan compounds
bool