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Context builder Context exporter Context importer Convert Model Annotation Draft recon FBA Flux Table Analysis FVA Gap filler Isolate finder Kegg Visualisation KOA KOA result extractor Load BiGG Models Metabolites file transformation Network exporter Network importer Network merger Orphan remover Reaction adder Reaction remover Reactions file transformation Transformer Biomass Reaction Transformer EC Number Table Transformer Entity ID Table Transformer Flux Table Transformer Medium Transformer Phenotype Table Transporter adder Twin annotator Twin builder Twin exporter Twin flattener Twin importer Twin reducer XML/Matlab to JSON Version

Load BiGG Models

TASK
Typing name :  TASK.gws_gena.LoadBiggModels Brick :  gws_gena

Retrieve data from Bigg Models database

This task allows you to retrieve a metabolic model from the BiGG database. In the parameters you must specify the organism identifier from the Bigg Models database. For example, iMM1415 for "mus musculus". You can also select the output file format (json recommended).

Output

Output file
File containing desired model
File

Configuration

organism

Optional

Bigg Models database organism identifier

Type : string

name_organism

Optional

Bigg Models database organism name

Type : string

format

Optional

Output file format

Type : stringDefault value : json