Retrieve data from Bigg Models database
Output
Output file
File containing desired model
Configuration
organism
Bigg Models database organism identifier
stringname_organism
Bigg Models database organism name
stringAcinetobacter baumannii AYE Bacillus subtilis subsp. subtilis str. 168 Chlamydomonas reinhardtii Clostridioides difficile 630 Clostridium ljungdahlii DSM 13528 Cricetulus griseus, iCHOv1 Cricetulus griseus, iCHOv1_DG44 Escherichia coli 042 Escherichia coli 536 Escherichia coli 55989 Escherichia coli ABU 83972 Escherichia coli APEC O1 Escherichia coli ATCC 8739 Escherichia coli ATCC 8739, iEC1349_Crooks Escherichia coli B str. REL606 Escherichia coli BL21(DE3) Escherichia coli BL21(DE3), iB21_1397 Escherichia coli BL21(DE3), iEC1356_Bl21DE3 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Escherichia coli BW2952 Escherichia coli C Escherichia coli CFT073 Escherichia coli DH1, iEcDH1_1363 Escherichia coli DH1, iECDH1ME8569_1439 Escherichia coli DH5[alpha] Escherichia coli ED1a Escherichia coli ETEC H10407 Escherichia coli HS Escherichia coli IAI1 Escherichia coli IAI39 Escherichia coli IHE3034 Escherichia coli KO11FL Escherichia coli LF82 Escherichia coli NA114 Escherichia coli O103:H2 str. 12009 Escherichia coli O111:H- str. 11128 Escherichia coli O127:H6 str. E2348/69 Escherichia coli O139:H28 str. E24377A Escherichia coli O157:H7 str. EC4115 Escherichia coli O157:H7 str. EDL933 Escherichia coli O157:H7 str. Sakai Escherichia coli O157:H7 str. TW14359 Escherichia coli O26:H11 str. 11368 Escherichia coli O55:H7 str. CB9615 Escherichia coli O83:H1 str. NRG 857C Escherichia coli S88 Escherichia coli SE11 Escherichia coli SE15 Escherichia coli SMS-3-5 Escherichia coli str. K-12 substr. DH10B Escherichia coli str. K-12 substr. MG1655, e_coli_core Escherichia coli str. K-12 substr. MG1655, iAF1260 Escherichia coli str. K-12 substr. MG1655, iAF1260b Escherichia coli str. K-12 substr. MG1655, iJO1366 Escherichia coli str. K-12 substr. MG1655, iJR904 Escherichia coli str. K-12 substr. MG1655, iML1515 Escherichia coli str. K-12 substr. W3110 Escherichia coli str. K-12 substr. W3110, iEC1372_W3110 Escherichia coli UM146 Escherichia coli UMN026 Escherichia coli UMNK88 Escherichia coli UTI89 Escherichia coli W Escherichia coli W, iEC1364_W Escherichia coli W, iWFL_1372 Geobacter metallireducens GS-15 Helicobacter pylori 26695 Homo sapiens, iAB_RBC_283 Homo sapiens, iAT_PLT_636 Homo sapiens, RECON1 Homo sapiens, Recon3D Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Lactococcus lactis subsp. cremoris MG1363 Methanosarcina barkeri str. Fusaro Mus musculus Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis H37Rv, iNJ661 Organism Phaeodactylum tricornutum CCAP 1055/1 Plasmodium berghei Plasmodium cynomolgi strain B Plasmodium falciparum 3D7 Plasmodium knowlesi strain H Plasmodium vivax Sal-1 Pseudomonas putida KT2440, iJN1463 Pseudomonas putida KT2440, iJN746 Saccharomyces cerevisiae S288C,iMM904 Saccharomyces cerevisiae S288C,iND750 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella pan-reactome Shigella boydii CDC 3083-94 Shigella boydii Sb227 Shigella dysenteriae Sd197 Shigella flexneri 2002017 Shigella flexneri 2a str. 2457T Shigella flexneri 2a str. 301 Shigella flexneri 5 str. 8401 Shigella sonnei Ss046 Staphylococcus aureus subsp. aureus N315 Staphylococcus aureus subsp. aureus USA300_TCH1516 Synechococcus elongatus PCC 7942 Synechocystis sp. PCC 6803 Synechocystis sp. PCC 6803, iSynCJ816 Thermotoga maritima MSB8 Trypanosoma cruzi Dm28c, iIS312 Trypanosoma cruzi Dm28c, iIS312_Amastigote Trypanosoma cruzi Dm28c, iIS312_Epimastigote Trypanosoma cruzi Dm28c, iIS312_Trypomastigote Yersinia pestis CO92 format
Output file format
stringjson xml xml.gz json