Publication dateMar 9, 2022
Confidentiality public Public
Typing name : TASK.gws_gena.DraftRecon001 Brick : gws_gena Draft network reconstruction
DraftRecon task.
This task performs a draft reconstruction of a metabolic network using a list of EC numbers or taxonomy IDs.
In input, you need to provide at least a resource EC number Table or set the parameter "tax_id".
You can also add a Biomass Reaction Table describing the composition of a cell (or organism) biomass.
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Input
Table of ec numbers
2d excel like table
Optional
Table
2d excel like table
Optional
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Output
Network
Metabolic network
settings
Configuration
The unique name of the network. Required to uniquely identify taxa in microbial communities
Type : stringDefault value : tNRqThe NCBI taxonomy id. For example: `tax_id = 562` for E. Coli
Type : string tax_search_method
Optional
If 'bottom_up', the algorithm will to traverse the taxonomy tree to search at higher taxonomy levels until a reaction is found. If `none`, the algorithm will only search at the given taxonomy level given by `tax_id`
Type : stringAllowed values : none bottom_up Default value : bottom_upTechnical bricks to reuse or customize
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