Login
Back to bricks list
Introduction Version

Convert Model Annotation

TASK
Typing name :  TASK.gws_gena.ConvertAnnotation Brick :  gws_gena v

This task adds metabolites and reactions identifiers (ChEBI, Rhea and ec-number) to a model

Convert annotation task class

Complete the annotation of a metabolic model thanks to internal correspondence tables. This task can add missing identifiers to metabolics and reactions. For metabolites, it adds ChEBI identifiers. For reactions, it can add Rhea identifiers and EC numbers.

Please provide your metabolic model in input. In output, you will get your model updated and a table summarising the changes made.

Input

Model
The model to annotate

Output

Model annotated
The model completed
Results Annotation
The annotation result table

Configuration

metabolites_id

What is the type of metabolite 'id'?

Type : stringAllowed values :   BiGG  Literal_name  Other 

metabolites_name

What is the type of metabolite 'name'?

Type : stringAllowed values :   BiGG  Literal_name  Other 

reaction_id

What is the type of reaction 'id'?

Type : stringAllowed values :   BiGG  Other 

reaction_name

What is the type of reaction 'name'?

Type : stringAllowed values :   BiGG  Other