Convert Model Annotation

Typing name : TASK.gws_gena.ConvertAnnotation

Brick : gws_gena

This task adds metabolites and reactions identifiers (ChEBI, Rhea and ec-number) to a model

Convert annotation task class

Complete the annotation of a metabolic model thanks to internal correspondence tables. This task can add missing identifiers to metabolics and reactions. For metabolites, it adds ChEBI identifiers. For reactions, it can add Rhea identifiers and EC numbers.

Please provide your metabolic model in input. In output, you will get your model updated and a table summarising the changes made.

Input

Model

The model to annotate

File

Output

Model annotated

The model completed

File

Results Annotation

The annotation result table

Table

Configuration

metabolites_id

What is the type of metabolite 'id'?

Type : string

Allowed values : BiGG Literal_name Other

metabolites_name

What is the type of metabolite 'name'?

Type : string

Allowed values : BiGG Literal_name Other

reaction_id

What is the type of reaction 'id'?

Type : string

Allowed values : BiGG Other

reaction_name

What is the type of reaction 'name'?

Type : string

Allowed values : BiGG Other

Input

Output

Configuration

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