Context builder

ContextBuilder Task

This task creates a Context object using a Flux Table or a 'Phenotype Table' and a metabolic Network. A Context object is used to create digital twins and perform metabolic flux analyses.

• Inputs
  • The Network is a metabolic network
  • The Flux Table gives the list of metabolic fluxes that are experimentally measured.
  • The Phenotype table gives the list of internal metabolic variations that are experimentally measured.
• Output
  • The Context object that can be used for flux simulation It generally corresponds to the consupmtion or production rates of a list on metabolites measured in a bioreactor.