Introduction Biomass reaction table importer Context builder Context exporter Context importer Convert Model Annotation Draft recon Draft recon EC number table importer Entity ID table importer FBA Flux Table Analysis Flux table importer FVA Gap filler Isolate finder KOA KOA result extractor Medium table importer Network exporter Network importer Network merger Orphan remover Phenotype table importer Reaction adder Reaction remover Smart json modificator (cobra) Transporter adder Twin annotator Twin builder Twin exporter Twin flattener Twin importer Twin reducer XML/Matlab to JSON
Technical Documentation
Resources
Tasks
Protocols
Context builder
Build a context for a metabolic network using a flux table
ContextBuilder Task
This task creates a Context object using a FluxTable and metabolic Network.
A Context object is used to create digital twins and perform metabolic flux analyses.
- The
FluxTablegives a list of metabolic fluxes experimentally measured. It generally corresponds to the consupmtion or production rates of a list on metabolites measured in a bioreactor. - The
Networkis a metabolic network
Input
Network
Metabolic network
Flux table
Table of metabolic flux measurements
Output
Network context
Context of metabolic network