R conda env agent - gws_core

Typing name : TASK.gws_core.RCondaAgent

Brick : gws_core

Agent to run R snippets in conda a shell environment.

Conda-based R agents allow to execute R snippets on the fly in isolated conda environments.

Agents are fast and efficient tools to develop, test, use and share code snippets.

Warning: It is recommended to use code snippets comming from trusted sources.

Here is the general documentation for agent: https://constellab.community/bricks/gws_core/latest/doc/developer-guide/agent/getting-started/69820653-52e0-41ba-a5f3-4d9d54561779

Here is the documentation of the agent: https://constellab.community/bricks/gws_core/latest/doc/developer-guide/agent/env-agent/c6acb3c3-2a7c-44cd-8fb2-ea1beccdbdcc

Use the parameter 'Log output to task' to enable print messages (like print, logging, etc.) to be logged in the task log. This is useful to debug your code and see the output of your code.

Input

File or folder

Optional

Fs node

Output

File or folder

Fs node

Configuration

params

Optional

Type : dynamic

Default value : [object Object]

env

Optional

YAML configuration of the R conda environment

Type : yaml_code_param

Default value :

name: .venv
channels:
  - conda-forge
dependencies:
  - r-base

code

Optional

The R code snippet to execute using shell command

Type : r_code_param

Default value :

# This is a snippet template for a R agent.

# Read the source csv file with header, row names and comma separator
csv <- read.csv(source_paths[1], header = TRUE, sep = ",", row.names = 1)

# Transpose the table, keep the header
csv_result <- t(csv)

# Write the csv file into the result folder
result_path <- "result.csv"
write.csv(csv_result, file = result_path, row.names = TRUE, col.names = TRUE)
target_paths <- c(result_path)

log_stdout

Optional

Advanced parameter

Log the output of the code snippet to the task log

Type : bool